updated documentation relative to the Howitt et al preprint #242
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on: | |
push: | |
pull_request: | |
branches: | |
- devel | |
paths-ignore: | |
- 'README.md' | |
name: R-CMD-check | |
jobs: | |
R-CMD-check: | |
runs-on: ubuntu-latest | |
container: plger/scdblfinder:latest | |
steps: | |
- name: Check out repo | |
uses: actions/checkout@v2 | |
- name: Install latest BiocCheck | |
run: BiocManager::install(c("BiocCheck")) | |
shell: Rscript {0} | |
- name: Check | |
env: | |
_R_CHECK_CRAN_INCOMING_REMOTE_: false | |
run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error", check_dir = "check") | |
shell: Rscript {0} | |
- name: BiocCheck | |
run: BiocCheck::BiocCheck(".") | |
shell: Rscript {0} | |
- name: Upload check results | |
if: failure() | |
uses: actions/upload-artifact@master | |
with: | |
name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
path: check | |
- name: Show testthat output | |
if: always() | |
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash |