v0.3.3

This release mostly affects Probdiffeq's internals. The only user-facing change is that now, the choice of while-loop in the solution routines can be temporarily overwritten. One application is constructing reverse-mode differentiable yet adaptive IVP solvers. Consult the tutorials for an example.

What's Changed

• Merge IVP-solution modules by @pnkraemer in #679
• Remove *.ipynb files from version control by @pnkraemer in #680
• Merge linting and formatting behaviour by @pnkraemer in #681
• Unify the names of benchmark-related commands in the makefile by @pnkraemer in #682
• Include example CI in doc CI by @pnkraemer in #683
• Automate readme and index equality by @pnkraemer in #684
• Implement backend.control_flow.scan by @pnkraemer in #685
• Implement backend.functools.vmap by @pnkraemer in #686
• Implement backend.control_flow.cond by @pnkraemer in #687
• Implement backend.functools.jit by @pnkraemer in #688
• Implement backend.linalg.qr_r by @pnkraemer in #689
• Implement backend.random by @pnkraemer in #690
• Implement backend.linalg.cholesky_lower by @pnkraemer in #691
• Implement backend.numpy factorial by @pnkraemer in #692
• Implement backend.functools.jet by @pnkraemer in #694
• Implement backend.numpy.arange by @pnkraemer in #695
• Implement backend.linalg.{vector, matrix}_norm by @pnkraemer in #693
• Implement backend.numpy.ndim by @pnkraemer in #696
• Implement backend.tree_util by @pnkraemer in #697
• Remove an 'Iterator' type hint by @pnkraemer in #698
• Replace a reference to jax.tree_map with tree_util.tree_map by @pnkraemer in #700
• Implement backend.numpy.{minimum, maximum} by @pnkraemer in #699
• Implement backend.numpy.{where, abs} by @pnkraemer in #701
• Implement backend.linalg.solve_triangular by @pnkraemer in #702
• Implement backend.numpy.{finfo_eps, diff} by @pnkraemer in #703
• Implement backend.numpy.{asarray, squeeze, squeeze_along_axis} by @pnkraemer in #704
• Implement backend.linalg.cholesky_solve and rename cholesky_lower to cholesky_factor by @pnkraemer in #705
• Implement backend.numpy.{atleast_1d, concatenate} by @pnkraemer in #706
• Implement backend.numpy.{ones_like, inf, sqrt} by @pnkraemer in #708
• Implement backend.typing.Array by @pnkraemer in #707
• Implement backend.numpy.{zeros_like, eye} by @pnkraemer in #709
• Replace all remaining jnp.* calls with backend.numpy.* calls by @pnkraemer in #710
• Remove unused imports from probdiffeq.taylor subpackage by @pnkraemer in #711
• Implement backend.functools.linearize by @pnkraemer in #712
• Implement backend numpy block diag by @pnkraemer in #713
• Implement backend.functools.jvp by @pnkraemer in #714
• Implement backend.containers.dataclass by @pnkraemer in #715
• Implement backend.abc by @pnkraemer in #716
• Implement backend.itertools by @pnkraemer in #717
• Implement remaining types in backend.typing by @pnkraemer in #718
• Implement backend.warnings by @pnkraemer in #720
• Implement backend.special by @pnkraemer in #719
• Implement backend.ode by @pnkraemer in #721
• Rename ode.odeint to ode.odeint_and_save_at by @pnkraemer in #722
• Implement backend.stats and backend.functools.jacrev by @pnkraemer in #723
• Change signature of ode.odeint_and_save_at to be consistent with the rest of probdiffeq by @pnkraemer in #724
• Change 'from jax.config import config' to 'import jax.config' by @pnkraemer in #725
• Remove remaining 'import jax's by @pnkraemer in #727
• Implement backend.ode.odeint_dense by @pnkraemer in #726
• Implement backend.warnings.filterwarnings by @pnkraemer in #729
• Implement backend.ode.ivp_{logistic, lotka_volterra, ...} by @pnkraemer in #728
• Implement backend.config by @pnkraemer in #730
• Reorder the quickstart-section of the docs by @pnkraemer in #731
• Change tutorial format from .md to .py by @pnkraemer in #732
• Delete 'smoothing' example notebook by @pnkraemer in #735
• Implement backend.control_flow.context_overwrite_{while_loop, scan} and create a tutorial for using it by @pnkraemer in #736
• Remove yield-values from overwrite-loop contexts by @pnkraemer in #737
• Warn about the experimental nature of Probdiffeq in its readme, and explain versioning by @pnkraemer in #738

Full Changelog: v0.3.2...v0.3.3