removed check for ganglia post processing script

Tools/commands/Segment_Ganglia.ijm

@@ -12,10 +12,6 @@ setOption("ExpandableArrays", true);
 var fiji_dir=getDirectory("imagej");
 var gat_dir=fiji_dir+"scripts"+fs+"GAT"+fs+"Tools"+fs+"commands";
 
-//check if ganglia prediction post processing macro present
-var deepimagej_post_processing=gat_dir+fs+"Ganglia_prediction_post_processing.ijm";
-if(!File.exists(deepimagej_post_processing)) exit("Cannot find roi to label script. Returning: "+deepimagej_post_processing);
-
 
 
 macro "ganglia_prediction"
@@ -135,7 +131,6 @@ function ganglia_deepImageJ(max_projection,cell_channel,ganglia_channel)
 
 	close(ganglia_pred_processed);
 	close("ganglia_rgb_2");
-	close(temp_pred);
 	close(ganglia_rgb);
 
 	selectWindow(ganglia_final);

_Analyse Neuron (Multi-channel) Advanced.ijm

@@ -50,11 +50,8 @@ if(!File.exists(roi_to_label)) exit("Cannot find roi to label script. Returning:
 var ganglia_cell_count=gat_dir+fs+"Calculate_Neurons_per_Ganglia.ijm";
 if(!File.exists(ganglia_cell_count)) exit("Cannot find ganglia cell count script. Returning: "+ganglia_cell_count);
 
-//check if ganglia prediction post processing macro present
-var deepimagej_post_processing=gat_dir+fs+"Ganglia_prediction_post_processing.ijm";
-if(!File.exists(deepimagej_post_processing)) exit("Cannot find roi to label script. Returning: "+deepimagej_post_processing);
-
-//check if ganglia prediction post processing macro present
+
+//check if ganglia prediction macro present
 var segment_ganglia=gat_dir+fs+"Segment_Ganglia.ijm";
 if(!File.exists(segment_ganglia)) exit("Cannot find segment ganglia script. Returning: "+segment_ganglia);
 

_Analyse Neuron (Multi-channel).ijm

@@ -78,11 +78,7 @@ if(!File.exists(roi_to_label)) exit("Cannot find roi to label script. Returning:
 var ganglia_cell_count=gat_dir+fs+"Calculate_Neurons_per_Ganglia.ijm";
 if(!File.exists(ganglia_cell_count)) exit("Cannot find ganglia cell count script. Returning: "+ganglia_cell_count);
 
-//check if ganglia prediction post processing macro present
-var deepimagej_post_processing=gat_dir+fs+"Ganglia_prediction_post_processing.ijm";
-if(!File.exists(deepimagej_post_processing)) exit("Cannot find roi to label script. Returning: "+deepimagej_post_processing);
-
-//check if ganglia prediction post processing macro present
+//check if ganglia prediction  macro present
 var segment_ganglia=gat_dir+fs+"Segment_Ganglia.ijm";
 if(!File.exists(segment_ganglia)) exit("Cannot find segment ganglia script. Returning: "+segment_ganglia);
 

_Analyse Neurons (Hu only).ijm

@@ -61,11 +61,7 @@ if(!File.exists(roi_to_label)) exit("Cannot find roi to label script. Returning:
 var ganglia_cell_count=gat_dir+fs+"Calculate_Neurons_per_Ganglia.ijm";
 if(!File.exists(ganglia_cell_count)) exit("Cannot find ganglia cell count script. Returning: "+ganglia_cell_count);
 
-//check if ganglia prediction post processing macro present
-var deepimagej_post_processing=gat_dir+fs+"Ganglia_prediction_post_processing.ijm";
-if(!File.exists(deepimagej_post_processing)) exit("Cannot find roi to label script. Returning: "+deepimagej_post_processing);
-
-//check if ganglia prediction post processing macro present
+//check if ganglia prediction  macro present
 var segment_ganglia=gat_dir+fs+"Segment_Ganglia.ijm";
 if(!File.exists(segment_ganglia)) exit("Cannot find segment ganglia script. Returning: "+segment_ganglia);