Implementação de Testes Automatizados

.github/workflows/api.yaml

@@ -0,0 +1,140 @@
+name: API
+
+on:
+  push:
+    paths:
+      - ".github/workflows/api*"
+      - "api/**/*"
+
+jobs:
+  lint:
+    name: Lint
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: "3.11.x"
+
+      - name: Set up dependencies
+        run: |
+          cd api/
+          pip install -U pip poetry
+          poetry config virtualenvs.create false
+          poetry install --with dev
+
+      - name: Run linters
+        run: |
+          cd api/
+          task lint
+
+  tests:
+    name: Tests
+    runs-on: ubuntu-latest
+    container: python:3.11-slim
+    env:
+      INFISICAL_ADDRESS: ${{ secrets.INFISICAL_ADDRESS }}
+      INFISICAL_TOKEN: ${{ secrets.INFISICAL_TOKEN }}
+    services:
+      db:
+        image: postgres:15
+        env:
+          POSTGRES_PASSWORD: postgres
+        ports:
+          - 5432:5432
+        options: >-
+          --health-cmd pg_isready
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+
+      - name: Set up dependencies
+        run: |
+          cd api/
+          pip install -U pip poetry
+          poetry config virtualenvs.create false
+          poetry install --with dev
+
+      - name: Set up database
+        run: |
+          cd api/
+          aerich init-db || true
+          aerich upgrade || true
+
+      - name: Run tests
+        run: |
+          cd api/
+          task test
+
+  deploy:
+    name: Build and Deploy
+    if: github.ref == 'refs/heads/main' || github.ref == 'refs/heads/development'
+    needs: [lint, tests]
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+
+      - name: Login to GitHub Container Registry
+        uses: docker/login-action@v1
+        with:
+          registry: ghcr.io
+          username: ${{ github.repository_owner }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Build and push image
+        uses: docker/build-push-action@v2
+        with:
+          context: api/
+          file: api/Dockerfile
+          push: true
+          tags: |
+            ghcr.io/${{ github.repository_owner }}/${{ github.event.repository.name }}:${{ github.sha }}
+            ghcr.io/${{ github.repository_owner }}/${{ github.event.repository.name }}:${{ github.ref == 'refs/heads/main' && 'latest' || github.ref == 'refs/heads/development' && 'latest-dev' || github.sha }}
+          labels: |
+            org.opencontainers.image.source=${{ github.event.repository.html_url }}
+            org.opencontainers.image.revision=${{ github.sha }}
+          build-args: |
+            BUILDKIT_INLINE_CACHE=1
+
+      - name: Setup Google Cloud CLI
+        uses: google-github-actions/[email protected]
+        with:
+          service_account_key: ${{ secrets.GCP_SA_KEY }}
+          project_id: ${{ secrets.GCP_PROJECT_ID }}
+          export_default_credentials: true
+
+      - name: Get GKE credentials
+        uses: google-github-actions/[email protected]
+        with:
+          cluster_name: ${{ secrets.GKE_CLUSTER }}
+          location: ${{ secrets.GKE_ZONE }}
+          credentials: ${{ secrets.GCP_SA_KEY }}
+
+      - name: Set up Kustomize
+        run: |-
+          curl -sfLo kustomize https://github.com/kubernetes-sigs/kustomize/releases/download/v3.1.0/kustomize_3.1.0_linux_amd64
+          chmod u+x ./kustomize
+          mv ./kustomize api/
+
+      - name: Deploy (main)
+        if: github.ref == 'refs/heads/main'
+        run: |-
+          cd api/
+          ./kustomize edit set image gcr.io/PROJECT_ID/IMAGE_NAME:TAG=ghcr.io/${{ github.repository_owner }}/${{ github.event.repository.name }}:${{ github.sha }}
+          ./kustomize build . | kubectl apply -n unificacao-prontuarios-prod -f -
+          kubectl rollout status -w -n unificacao-prontuarios-prod deployment/unificacao-prontuarios
+
+      - name: Deploy (development)
+        if: github.ref == 'refs/heads/development'
+        run: |-
+          cd api/
+          ./kustomize edit set image gcr.io/PROJECT_ID/IMAGE_NAME:TAG=ghcr.io/${{ github.repository_owner }}/${{ github.event.repository.name }}:${{ github.sha }}
+          ./kustomize build . | kubectl apply -n unificacao-prontuarios-dev -f -
+          kubectl rollout status -w -n unificacao-prontuarios-dev deployment/unificacao-prontuarios

.github/workflows/lib-docs.yaml

@@ -1,4 +1,4 @@
-name: Deploy docs
+name: Lib - Docs
 
 on:
   push:

.github/workflows/lib-lint.yaml

@@ -1,4 +1,4 @@
-name: CI - Lint
+name: Lib - Lint
 
 on:
   push:

.github/workflows/lib-tests.yaml

@@ -1,4 +1,4 @@
-name: CI - Tests
+name: Lib - Tests
 
 on:
   push:

README.md

@@ -1,27 +1,51 @@
-# FHIR
+# Prontuários Integrados API
 
 ## Preparação de Ambiente
-
 - Rode `pre-commit install`
 - O projeto está na pasta `api/`
+- Para rodar o banco de dados é obrigatório utilizar um ambiente virtual docker
+- Para rodar a API você pode optar pelo docker ou pelo ambiente
+
+### Utilizando Docker (BD e API)
+*Ideal para deploy e subir o banco de dados localmente*
+
+- Esteja na pasta `./api/`
 - Garanta instalação de Docker e Docker Compose
 - Configure em `docker-compose.yaml` a variável `ENVIRONMENT` para `dev` ou `prod`
    - `dev`: Ambiente de Desenvolvimento
    - `prod`: Ambiente de Produção
-- Rode `docker compose up --build` na raiz do projeto
-- Os serviços estão disponíveis em:
+- Para subir a API e o banco de dados, rode `docker compose up --build`
+- Se quiser subir apenas o banco de dados: `docker compose up db --build`
+- Os serviços ficam disponíveis em:
+
+|Serviço|URL|Porta|Usuário|Senha|
+|--|--|--|--|--|
+|Banco de Dados (Postgres) |localhost|5432|postgres|postgres|
+|API (Fast API) | localhost|**8000**|-|-|
+
+### Utilizando Poetry (Apenas API)
+*Ideal para debugging da API e execução de testes localmente*
+- Na pasta `./api/` rode `poetry shell` e depois `poetry install`
+- Para inicializar a API rode: `uvicorn app.main:app --host 0.0.0.0 --port 8001`
+   - PS.: Recomendado seguir o tutorial de Debugging e executar por lá.
+- O serviço estará disponivel em:
 
 |Serviço|URL|Porta|Usuário|Senha|
 |--|--|--|--|--|
-|Banco de Dados (Postgres) |localhost|8001|postgres|postgres|
-|API (Fast API) | localhost|8000|-|-|
+|API (Fast API) | localhost|**8001**|-|-|
+
 
 ## Dados Iniciais
 - Dois scripts que populam o banco com dados iniciais:
   - Crie um usuário próprio: `python scripts/create_user.py --username <USUARIO> --password <SENHA>`
   - Crie dados iniciais: `python scripts/database_initial_data.py`
 - **Atenção**: Caso precise limpar todos os dados do banco: `python scripts/database_cleanup.py`
 
+## Testes Automatizados
+
+- Os testes estão definidos na pasta `api/tests/`
+- Para rodar os testes basta executar no terminal `pytest --disable-warnings`
+
 ## Debugging
 - Para fazer o debugging da API você vai rodá-la fora do container docker. Dessa forma a configuração é simples.
 - Arquivos de configuração disponíveis em `.vscode/launch.json`.
@@ -36,67 +60,8 @@
 
 ### Uso
 - **Inicie a depuração**: o VSCode detecta automaticamente o arquivo que configura a depuração. Basta dar "play" na aba de depuração
+- O serviço fica disponível em:
 
-## Payloads para Testes
-
-### Entidade `Patient` (Campos Obrigatórios)
-
-```json
-{
-	"active": true,
-	"birth_date": "1999-12-20",
-	"gender": "male",
-	"cpf": "11111111111",
-	"name": "MANUEL GOMES",
-   "telecom":  [{
-      "value": "5521123456789"
-   }]
-}
-```
-
-### Entidade `Patient` (Todos os Campos)
-
-```json
-{
-	"active": true,
-   "address": [{
-    	"use": "home",
-    	"type": "physical",
-    	"line": "AV SQN BLOCO M 604 APARTAMENTO ASA NORTE",
-    	"city": "Rio de Janeiro",
-    	"state": "Rio de Janeiro",
-		"country": "Brasil",
-    	"postal_code": "70752130",
-    	"period": {
-    		"start": "2020-10-01 00:00:00",
-    		"end": "2020-10-02 00:00:00"
-    		}
-    	}],
-   "birth_city": "Rio de Janeiro",
-	"birth_country": "Brasil",
-	"birth_state": "Rio de Janeiro",
-	"birth_date": "1999-12-20 00:00:00",
-	"deceased": false,
-	"gender": "male",
-	"cpf": "12345678901",
-	"cns": "1234567890000000",
-	"name": "GABRIELA INACIO ALVES",
-	"nationality": "B",
-	"naturalization": "",
-	"mother": "MARILIA FARES DA ROCHA ALVES",
-	"father": "JURACY ALVES",
-	"protected_person": false,
-	"race": "Parda",
-	"ethnicity": "PATAXO",
-	"telecom":  [{
-		"system": "phone",
-		"use": "home",
-      	"value": "5521123456789",
-      	"rank": "1",
-      	"period": {
-      		"start": "2020-10-01 00:00:00",
-    		"end": "2020-10-02 00:00:00"
-    		}
-    	}]
-}
-```
+|Serviço|URL|Porta|Usuário|Senha|
+|--|--|--|--|--|
+|API (Fast API) | localhost|**8001**|-|-|

api/.kubernetes.yaml

@@ -0,0 +1,66 @@
+---
+# Deployment
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: unificacao-prontuarios
+spec:
+  replicas: 1
+  strategy:
+    type: RollingUpdate
+    rollingUpdate:
+      maxSurge: 1
+      maxUnavailable: 0
+  selector:
+    matchLabels:
+      app: unificacao-prontuarios
+  minReadySeconds: 5
+  template:
+    metadata:
+      labels:
+        app: unificacao-prontuarios
+    spec:
+      containers:
+        - name: unificacao-prontuarios
+          image: gcr.io/PROJECT_ID/IMAGE_NAME:TAG
+          ports:
+            - containerPort: 80
+          envFrom:
+            - secretRef:
+                name: unificacao-prontuarios-secrets
+          readinessProbe:
+            httpGet:
+              path: /docs
+              port: 80
+            initialDelaySeconds: 5
+            periodSeconds: 10
+          livenessProbe:
+            httpGet:
+              path: /docs
+              port: 80
+            initialDelaySeconds: 5
+            periodSeconds: 10
+          resources:
+            requests:
+              memory: "512Mi"
+              cpu: "250m"
+            limits:
+              memory: "1024Mi"
+              cpu: "500m"
+      restartPolicy: Always
+
+---
+# Service
+apiVersion: v1
+kind: Service
+metadata:
+  labels:
+    app: unificacao-prontuarios
+  name: unificacao-prontuarios
+spec:
+  ports:
+    - name: "80"
+      port: 80
+      targetPort: 80
+  selector:
+    app: unificacao-prontuarios

api/app/config/__init__.py

@@ -2,6 +2,7 @@
 from os import getenv
 from typing import List
 
+from infisical import InfisicalClient
 from loguru import logger
 
 
@@ -64,9 +65,25 @@ def getenv_list_or_action(
     return []
 
 
+def inject_environment_variables(environment: str):
+    """Inject environment variables from Infisical."""
+    site_url = getenv_or_action("INFISICAL_ADDRESS", action="raise")
+    token = getenv_or_action("INFISICAL_TOKEN", action="raise")
+    infisical_client = InfisicalClient(
+        token=token,
+        site_url=site_url,
+    )
+    secrets = infisical_client.get_all_secrets(environment=environment, attach_to_os_environ=True)
+    logger.info(f"Injecting {len(secrets)} environment variables from Infisical:")
+    for secret in secrets:
+        logger.info(f" - {secret.secret_name}: {'*' * len(secret.secret_value)}")
+
+
 environment = getenv_or_action("ENVIRONMENT", action="warn", default="dev")
-if environment not in ["dev", "prod"]:
-    raise ValueError("ENVIRONMENT must be one of 'dev' or 'prod'")
+if environment not in ["dev", "staging", "prod"]:
+    raise ValueError("ENVIRONMENT must be one of 'dev', 'staging' or 'prod'")
+
+inject_environment_variables(environment=environment)
 
 if environment == "dev":
     from app.config.dev import *  # noqa: F401, F403