upgrade numpy

pwrose · May 17, 2022 · 2d0d990 · 2d0d990
1 parent e2a879c
commit 2d0d990
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Showing 3 changed files with 13 additions and 1 deletion.
diff --git a/binder/environment.yml b/binder/environment.yml
@@ -11,9 +11,15 @@ dependencies:
   - pyspark=2.4.0
   - biopython=1.72
   - numba=0.41.0
+  - numpy=1.16.1
   - jupyterlab=3.2.5
   - py3Dmol=0.8.0
   - ipywidgets=7.6.5
   - pip
   - pip:
       - git+https://github.com/sbl-sdsc/mmtf-pyspark.git 
+
+variables:
+  SPARK_DRIVER_MEMORY: 16G
+  SPARK_DRIVER_MAXRESULTSIZE: 4G
+  SPARK_WORKER_MEMORY: 4G
diff --git a/environment.yml b/environment.yml
@@ -11,9 +11,15 @@ dependencies:
   - pyspark=2.4.0
   - biopython=1.72
   - numba=0.41.0
+  - numpy=1.16.1
   - jupyterlab=3.2.5
   - py3Dmol=0.8.0
   - ipywidgets=7.6.5
   - pip
   - pip:
       - git+https://github.com/sbl-sdsc/mmtf-pyspark.git 
+
+variables:
+  SPARK_DRIVER_MEMORY: 16G
+  SPARK_DRIVER_MAXRESULTSIZE: 4G
+  SPARK_WORKER_MEMORY: 4G
diff --git a/setup.py b/setup.py
@@ -13,7 +13,7 @@
                         ]
 
 mmtfPyspark_dependencies = ['msgpack==0.6.1',
-                            'numpy==1.15.4',
+                            'numpy==1.16.1',
                             'ipywidgets==7.6.5',
                             'mmtf-python==1.1.2',
                             'requests==2.20.0',