Code

Cutsite pairs rebased#199

Code

Merged

BjornFJohansson merged 23 commits intomasterpydna-group/pydna:masterfrom cutsite_pairs_rebasedpydna-group/pydna:cutsite_pairs_rebasedCopy head branch name to clipboardFeb 5, 2024

+1,245-1,086

Commits

Commits on Feb 2, 2024

• working for Dseq

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• WIP

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• Fixed itertools issue and modified tests , see #78

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• more WIP

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• closes #160

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• working

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• remove old cut2

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• extra docs

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• removed more_itertools deps

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• switch to alternative representation

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• update docs

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• Cutsite pairs bugs (#184)

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• Simpler cut representation (#187)

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• Update utils.py

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• closes #194

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• closes #195

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• closes #180 for all cases I could think of

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• closes #161

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Commits on Feb 5, 2024

• closes #197, but two tests still fail

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• Try to fix dependencies

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• fix typing syntax to be compatible with python 3.8

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• closes #198

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• all tests passing

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