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Ci hooks#276

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manulera wants to merge 51 commits intomasterpydna-group/pydna:masterfrom ci_hookspydna-group/pydna:ci_hooksCopy head branch name to clipboard

+133,650-1,632

Commits

Commits on Mar 27, 2024

• removed git hook

  BjornFJohansson

  committed
  78d4dad

• added new translation function

  BjornFJohansson

  committed
  b18e99e

• new orfs method for Seq based on three_frame_orfs function

  BjornFJohansson

  committed
  165c848

• new orfs_to_features method for Dseqrecord

  BjornFJohansson

  committed
  385e4f4

• new extract_from_text functions that also returns the intervening text between sequences

  BjornFJohansson

  committed
  385f2d9

• bugfix orfs for Seq and Dsecrecord

  BjornFJohansson

  committed
  8f81255

• added crispr tests

  BjornFJohansson

  committed
  6627eac

• added pairwise for older Python versions

  BjornFJohansson

  committed
  3a30a53

• older type hint

  BjornFJohansson

  committed
  a805598

Commits on Apr 18, 2024

• try to build docs locally on gh-pages

  BjornFJohansson

  committed
  da3e7e9

• Deploying to gh-pages from @ da3e7e9 🚀

  BjornFJohansson

  committed
  709b2c0

• try to build gh pages

  BjornFJohansson

  committed
  5be4f9d

• Deploying to gh-pages from @ 5be4f9d 🚀

  BjornFJohansson

  committed
  8ad74d7

• try to build gh pages

  BjornFJohansson

  committed
  b37a17c

• Deploying to gh-pages from @ b37a17c 🚀

  BjornFJohansson

  committed
  9084d14

• fix

  BjornFJohansson

  committed
  11aae3c

• Deploying to gh-pages from @ 11aae3c 🚀

  BjornFJohansson

  committed
  ed9592c

• added sphinx ext

  BjornFJohansson

  committed
  0f95223

• Deploying to gh-pages from @ 0f95223 🚀

  BjornFJohansson

  committed
  5ebb8f1

• Merge branch 'dev_bjorn' into gh-pages

  BjornFJohansson

  committed
  bc08a36

• Deploying to gh-pages from @ bc08a36 🚀

  BjornFJohansson

  committed
  40c4007

Commits on Apr 22, 2024

• try fix docs

  BjornFJohansson

  committed
  53652ec

• build docs

  BjornFJohansson

  committed
  a60a93b

• clean

  BjornFJohansson

  committed
  66a7b22

• redirect docs badge to action

  BjornFJohansson

  committed
  3386436

• redirect docs badge to action

  BjornFJohansson

  committed
  1294aa8

• fix readme links

  BjornFJohansson

  committed
  2653fb6

• fix readme

  BjornFJohansson

  committed
  1d02019

• fix

  BjornFJohansson

  committed
  c18015b

• try to fix test error

  BjornFJohansson

  committed
  6bbfdfc

Commits on May 1, 2024

• fix bug that recognized parts of re enzyme names as other enzymes

  BjornFJohansson

  committed
  836465a

• added comment with number of enzymes

  BjornFJohansson

  committed
  217b711

• changed number of expected enzymes to the correct number 621

  BjornFJohansson

  committed
  d5ffb6a

• more informative error msg

  BjornFJohansson

  committed
  62de1dd

Commits on May 8, 2024

• closes #216 (2)

  

  manulera

  authored and

  BjornFJohansson

  committed
  d1b52d5

Commits on Jul 2, 2024

• closes #196

  

  manulera

  authored and

  BjornFJohansson

  committed
  47cfecc

• vscode and poetry settings added

  

  manulera

  authored and

  BjornFJohansson

  committed
  11b57f1

• fix test

  

  manulera

  authored and

  BjornFJohansson

  committed
  7da9281

• add locations_overlap to utils

  

  manulera

  authored and

  BjornFJohansson

  committed
  009ad15

Commits on Jul 15, 2024

• Issue 238 (#239)

  Show description for 7747787
  manulera

  authored
  7747787

Commits on Jul 17, 2024

• closes #240

  

  JeffXiePL

  authored and

  BjornFJohansson

  committed
  44e54db

• atomically write default config

  

  jxu10

  authored and

  BjornFJohansson

  committed
  8f30e8e

Commits on Aug 8, 2024

• optimisation for #237

  

  manulera

  authored and

  BjornFJohansson

  committed
  0cc98b0

• fix python 3.8 typing

  

  manulera

  authored and

  BjornFJohansson

  committed
  90e3765

• include neb calculator and its tests

  

  manulera

  authored and

  BjornFJohansson

  committed
  ba29bad

• fix design and add tests

  

  manulera

  authored and

  BjornFJohansson

  committed
  f156549

Commits on Sep 6, 2024

• example commit for #176

  

  manulera

  authored and

  BjornFJohansson

  committed
  c590850

Commits on Sep 30, 2024

• Documentation notebooks 2 (#272)

  Show description for a629c82
  

  manulera

  and

  JeffXiePL

  authored
  a629c82

Commits on Oct 3, 2024

• update contribution guidelines (#274)

  manulera

  authored
  de1fd17

• update CI action to enforce hooks

  manulera

  committed
  44c16a7

• update action

  manulera

  committed
  60d83d9