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Separate workflow parser from knowledge graph creation #123

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merged 3 commits into from
Feb 10, 2025
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In the ongoing efforts separate workflow manager part and the creation of a knowledge graph here, I separated the workflow parser from the rest, so that I can move all the semantic part to semantikon.

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Binder 👈 Launch a binder notebook on branch pyiron/pyiron_ontology/wf_to_dict

@@ -422,6 +467,6 @@ def _append_missing_items(graph: Graph) -> Graph:
):
for obj in graph.objects(None, p):
triple = (obj, RDF.type, o)
if not triple in graph:
if triple not in graph:
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This change is not related. Since flake8 complains and I don't want to open an extra PR, I simply put it here.

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Coverage summary from Codacy

See diff coverage on Codacy

Coverage variation Diff coverage
+0.11% (target: -1.00%) 100.00%
Coverage variation details
Coverable lines Covered lines Coverage
Common ancestor commit (b89e516) 634 584 92.11%
Head commit (57d3174) 643 (+9) 593 (+9) 92.22% (+0.11%)

Coverage variation is the difference between the coverage for the head and common ancestor commits of the pull request branch: <coverage of head commit> - <coverage of common ancestor commit>

Diff coverage details
Coverable lines Covered lines Diff coverage
Pull request (#123) 14 14 100.00%

Diff coverage is the percentage of lines that are covered by tests out of the coverable lines that the pull request added or modified: <covered lines added or modified>/<coverable lines added or modified> * 100%

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@samwaseda samwaseda merged commit 026df76 into main Feb 10, 2025
17 of 19 checks passed
@samwaseda samwaseda deleted the wf_to_dict branch February 10, 2025 12:11
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