Fix typos (#37)

docs/helpers.html

@@ -161,7 +161,7 @@ <h1 class="title">Module <code>pypestutils.helpers</code></h1>
     return {&#34;all_results&#34;:allresults_df,&#34;interpolated_results&#34;:obsdf}
 
 def get_grid_info_from_gridspec(gridspec_fname: str) -&gt; dict:
-    &#34;&#34;&#34;Read structured grid info from a PEST-style grid specificatin file
+    &#34;&#34;&#34;Read structured grid info from a PEST-style grid specification file
     Parameters
     ----------
     gridspec_fname : str
@@ -728,7 +728,7 @@ <h1 class="title">Module <code>pypestutils.helpers</code></h1>
         the zone array
     varioaniso: float or numpy.ndarray
         the variogram anisotropy ratio.  Either a scalar or array of shape nnodes.
-    variobearing: flaot or numpy.ndarray
+    variobearing: float or numpy.ndarray
         the variogram anisotropy bearing.  Either a scalar or array of shape nnodes
     random_seed: int
         the random seed.  Default is 12345
@@ -1225,7 +1225,7 @@ <h2 class="section-title" id="header-functions">Functions</h2>
 <dt><strong><code>varioaniso</code></strong> :&ensp;<code>float</code> or <code>numpy.ndarray</code></dt>
 <dd>the variogram anisotropy ratio.
 Either a scalar or array of shape nnodes.</dd>
-<dt><strong><code>variobearing</code></strong> :&ensp;<code>flaot</code> or <code>numpy.ndarray</code></dt>
+<dt><strong><code>variobearing</code></strong> :&ensp;<code>float</code> or <code>numpy.ndarray</code></dt>
 <dd>the variogram anisotropy bearing.
 Either a scalar or array of shape nnodes</dd>
 <dt><strong><code>random_seed</code></strong> :&ensp;<code>int</code></dt>
@@ -1283,7 +1283,7 @@ <h2 id="returns">Returns</h2>
         the zone array
     varioaniso: float or numpy.ndarray
         the variogram anisotropy ratio.  Either a scalar or array of shape nnodes.
-    variobearing: flaot or numpy.ndarray
+    variobearing: float or numpy.ndarray
         the variogram anisotropy bearing.  Either a scalar or array of shape nnodes
     random_seed: int
         the random seed.  Default is 12345
@@ -1643,7 +1643,7 @@ <h2 id="returns">Returns</h2>
 <span>def <span class="ident">get_grid_info_from_gridspec</span></span>(<span>gridspec_fname: str) ‑> dict</span>
 </code></dt>
 <dd>
-<div class="desc"><p>Read structured grid info from a PEST-style grid specificatin file
+<div class="desc"><p>Read structured grid info from a PEST-style grid specification file
 Parameters</p>
 <hr>
 <dl>
@@ -1660,7 +1660,7 @@ <h2 id="returns">Returns</h2>
 <span>Expand source code</span>
 </summary>
 <pre><code class="python">def get_grid_info_from_gridspec(gridspec_fname: str) -&gt; dict:
-    &#34;&#34;&#34;Read structured grid info from a PEST-style grid specificatin file
+    &#34;&#34;&#34;Read structured grid info from a PEST-style grid specification file
     Parameters
     ----------
     gridspec_fname : str

docs/pestutilslib.html

@@ -76,7 +76,7 @@ <h1 class="title">Module <code>pypestutils.pestutilslib</code></h1>
     #            self.logger.warning(&#34;cannot call __del__: %s&#34;, err)
 
     def create_char_array(self, init: str | bytes, name: str):
-        &#34;&#34;&#34;Create c_char Array with a fixed size from dimvar and intial value.
+        &#34;&#34;&#34;Create c_char Array with a fixed size from dimvar and initial value.
 
         Parameters
         ----------
@@ -1121,7 +1121,7 @@ <h1 class="title">Module <code>pypestutils.pestutilslib</code></h1>
         krigtype : int, str, or enum.KrigType,
             Kriging type, where 0:simple, 1:ordinary.
         transtype : int, str, enum.TransType
-            Tranformation type, where 0 is none and 1 is log.
+            Transformation type, where 0 is none and 1 is log.
         sourceval : array_like
             Values at sources, 1D array with shape (npts,).
         meanval : float, array_like, optional
@@ -1434,7 +1434,7 @@ <h1 class="title">Module <code>pypestutils.pestutilslib</code></h1>
         factorfiletype : int, str or enum.FactorFileType
             Factor file type, where 0:binary, 1:text.
         transtype : int, str, enum.TransType
-            Tranformation type, where 0 is none and 1 is log.
+            Transformation type, where 0 is none and 1 is log.
         lt_target, gt_target : str or bool
             Whether to undercut or exceed target, use &#34;Y&#34;/&#34;N&#34; or bool.
         sourceval : array_like
@@ -1516,7 +1516,7 @@ <h1 class="title">Module <code>pypestutils.pestutilslib</code></h1>
         znt : int or array_like
             Target point zones, integer or 1D array with shape (mpts,).
         transtype : int, str, enum.TransType
-            Tranformation type, where 0 is none and 1 is log.
+            Transformation type, where 0 is none and 1 is log.
         anis : float or array_like
             Local anisotropy, float or 1D array with shape (mpts,).
         bearing : float or array_like
@@ -1600,7 +1600,7 @@ <h1 class="title">Module <code>pypestutils.pestutilslib</code></h1>
         znt : int or array_like
             Target point zones, integer or 1D array with shape (mpts,).
         transtype : int, str, enum.TransType
-            Tranformation type, where 0 is none and 1 is log.
+            Transformation type, where 0 is none and 1 is log.
         ahmax, ahmin, avert : float or array_like
             Relative correlation lengths, float or 1D array with shape (mpts,).
         bearing, dip, rake : float or array_like
@@ -1933,7 +1933,7 @@ <h2 id="parameters">Parameters</h2>
     #            self.logger.warning(&#34;cannot call __del__: %s&#34;, err)
 
     def create_char_array(self, init: str | bytes, name: str):
-        &#34;&#34;&#34;Create c_char Array with a fixed size from dimvar and intial value.
+        &#34;&#34;&#34;Create c_char Array with a fixed size from dimvar and initial value.
 
         Parameters
         ----------
@@ -2978,7 +2978,7 @@ <h2 id="parameters">Parameters</h2>
         krigtype : int, str, or enum.KrigType,
             Kriging type, where 0:simple, 1:ordinary.
         transtype : int, str, enum.TransType
-            Tranformation type, where 0 is none and 1 is log.
+            Transformation type, where 0 is none and 1 is log.
         sourceval : array_like
             Values at sources, 1D array with shape (npts,).
         meanval : float, array_like, optional
@@ -3291,7 +3291,7 @@ <h2 id="parameters">Parameters</h2>
         factorfiletype : int, str or enum.FactorFileType
             Factor file type, where 0:binary, 1:text.
         transtype : int, str, enum.TransType
-            Tranformation type, where 0 is none and 1 is log.
+            Transformation type, where 0 is none and 1 is log.
         lt_target, gt_target : str or bool
             Whether to undercut or exceed target, use &#34;Y&#34;/&#34;N&#34; or bool.
         sourceval : array_like
@@ -3373,7 +3373,7 @@ <h2 id="parameters">Parameters</h2>
         znt : int or array_like
             Target point zones, integer or 1D array with shape (mpts,).
         transtype : int, str, enum.TransType
-            Tranformation type, where 0 is none and 1 is log.
+            Transformation type, where 0 is none and 1 is log.
         anis : float or array_like
             Local anisotropy, float or 1D array with shape (mpts,).
         bearing : float or array_like
@@ -3457,7 +3457,7 @@ <h2 id="parameters">Parameters</h2>
         znt : int or array_like
             Target point zones, integer or 1D array with shape (mpts,).
         transtype : int, str, enum.TransType
-            Tranformation type, where 0 is none and 1 is log.
+            Transformation type, where 0 is none and 1 is log.
         ahmax, ahmin, avert : float or array_like
             Relative correlation lengths, float or 1D array with shape (mpts,).
         bearing, dip, rake : float or array_like
@@ -4602,7 +4602,7 @@ <h2 id="returns">Returns</h2>
 <span>def <span class="ident">create_char_array</span></span>(<span>self, init: str | bytes, name: str)</span>
 </code></dt>
 <dd>
-<div class="desc"><p>Create c_char Array with a fixed size from dimvar and intial value.</p>
+<div class="desc"><p>Create c_char Array with a fixed size from dimvar and initial value.</p>
 <h2 id="parameters">Parameters</h2>
 <dl>
 <dt><strong><code>init</code></strong> :&ensp;<code>str</code> or <code>bytes</code></dt>
@@ -4615,7 +4615,7 @@ <h2 id="parameters">Parameters</h2>
 <span>Expand source code</span>
 </summary>
 <pre><code class="python">def create_char_array(self, init: str | bytes, name: str):
-    &#34;&#34;&#34;Create c_char Array with a fixed size from dimvar and intial value.
+    &#34;&#34;&#34;Create c_char Array with a fixed size from dimvar and initial value.
 
     Parameters
     ----------
@@ -5865,7 +5865,7 @@ <h2 id="parameters">Parameters</h2>
 <dt><strong><code>factorfiletype</code></strong> :&ensp;<code>int, str</code> or <code>enum.FactorFileType</code></dt>
 <dd>Factor file type, where 0:binary, 1:text.</dd>
 <dt><strong><code>transtype</code></strong> :&ensp;<code>int, str, enum.TransType</code></dt>
-<dd>Tranformation type, where 0 is none and 1 is log.</dd>
+<dd>Transformation type, where 0 is none and 1 is log.</dd>
 <dt><strong><code>lt_target</code></strong>, <strong><code>gt_target</code></strong> :&ensp;<code>str</code> or <code>bool</code></dt>
 <dd>Whether to undercut or exceed target, use "Y"/"N" or bool.</dd>
 <dt><strong><code>sourceval</code></strong> :&ensp;<code>array_like</code></dt>
@@ -5906,7 +5906,7 @@ <h2 id="returns">Returns</h2>
     factorfiletype : int, str or enum.FactorFileType
         Factor file type, where 0:binary, 1:text.
     transtype : int, str, enum.TransType
-        Tranformation type, where 0 is none and 1 is log.
+        Transformation type, where 0 is none and 1 is log.
     lt_target, gt_target : str or bool
         Whether to undercut or exceed target, use &#34;Y&#34;/&#34;N&#34; or bool.
     sourceval : array_like
@@ -5976,7 +5976,7 @@ <h2 id="parameters">Parameters</h2>
 <dt><strong><code>znt</code></strong> :&ensp;<code>int</code> or <code>array_like</code></dt>
 <dd>Target point zones, integer or 1D array with shape (mpts,).</dd>
 <dt><strong><code>transtype</code></strong> :&ensp;<code>int, str, enum.TransType</code></dt>
-<dd>Tranformation type, where 0 is none and 1 is log.</dd>
+<dd>Transformation type, where 0 is none and 1 is log.</dd>
 <dt><strong><code>anis</code></strong> :&ensp;<code>float</code> or <code>array_like</code></dt>
 <dd>Local anisotropy, float or 1D array with shape (mpts,).</dd>
 <dt><strong><code>bearing</code></strong> :&ensp;<code>float</code> or <code>array_like</code></dt>
@@ -6024,7 +6024,7 @@ <h2 id="returns">Returns</h2>
     znt : int or array_like
         Target point zones, integer or 1D array with shape (mpts,).
     transtype : int, str, enum.TransType
-        Tranformation type, where 0 is none and 1 is log.
+        Transformation type, where 0 is none and 1 is log.
     anis : float or array_like
         Local anisotropy, float or 1D array with shape (mpts,).
     bearing : float or array_like
@@ -6090,7 +6090,7 @@ <h2 id="parameters">Parameters</h2>
 <dt><strong><code>znt</code></strong> :&ensp;<code>int</code> or <code>array_like</code></dt>
 <dd>Target point zones, integer or 1D array with shape (mpts,).</dd>
 <dt><strong><code>transtype</code></strong> :&ensp;<code>int, str, enum.TransType</code></dt>
-<dd>Tranformation type, where 0 is none and 1 is log.</dd>
+<dd>Transformation type, where 0 is none and 1 is log.</dd>
 <dt><strong><code>ahmax</code></strong>, <strong><code>ahmin</code></strong>, <strong><code>avert</code></strong> :&ensp;<code>float</code> or <code>array_like</code></dt>
 <dd>Relative correlation lengths, float or 1D array with shape (mpts,).</dd>
 <dt><strong><code>bearing</code></strong>, <strong><code>dip</code></strong>, <strong><code>rake</code></strong> :&ensp;<code>float</code> or <code>array_like</code></dt>
@@ -6144,7 +6144,7 @@ <h2 id="returns">Returns</h2>
     znt : int or array_like
         Target point zones, integer or 1D array with shape (mpts,).
     transtype : int, str, enum.TransType
-        Tranformation type, where 0 is none and 1 is log.
+        Transformation type, where 0 is none and 1 is log.
     ahmax, ahmin, avert : float or array_like
         Relative correlation lengths, float or 1D array with shape (mpts,).
     bearing, dip, rake : float or array_like
@@ -6223,7 +6223,7 @@ <h2 id="parameters">Parameters</h2>
 <dt><strong><code>krigtype</code></strong> :&ensp;<code>int, str,</code> or <code>enum.KrigType,</code></dt>
 <dd>Kriging type, where 0:simple, 1:ordinary.</dd>
 <dt><strong><code>transtype</code></strong> :&ensp;<code>int, str, enum.TransType</code></dt>
-<dd>Tranformation type, where 0 is none and 1 is log.</dd>
+<dd>Transformation type, where 0 is none and 1 is log.</dd>
 <dt><strong><code>sourceval</code></strong> :&ensp;<code>array_like</code></dt>
 <dd>Values at sources, 1D array with shape (npts,).</dd>
 <dt><strong><code>meanval</code></strong> :&ensp;<code>float, array_like</code>, optional</dt>
@@ -6269,7 +6269,7 @@ <h2 id="returns">Returns</h2>
     krigtype : int, str, or enum.KrigType,
         Kriging type, where 0:simple, 1:ordinary.
     transtype : int, str, enum.TransType
-        Tranformation type, where 0 is none and 1 is log.
+        Transformation type, where 0 is none and 1 is log.
     sourceval : array_like
         Values at sources, 1D array with shape (npts,).
     meanval : float, array_like, optional

docs/pestutilslib/fortran_library_documentation.md

@@ -724,7 +724,7 @@ Specifications of a structured model grid are also provided in a “grid specifi
 
 Function *interp_from_mf6_depvar_file()* reads a dependent-variable file written by MODFLOW 6. For every output time that is recorded in this file, it undertakes spatial interpolation of model-calculated dependent variables to a set of points. Spatial interpolation is implemented using factors that were previously calculated by function *calc_mf6_interp_factors()*.
 
-Arrays used by *interp_from_mf6_depvar_file()* to store spatial interpolation outcomes are useable by function *interp_to_obstime()*. Hence temporal interpolation to observation times can follow spatial interpolation to observation sites.
+Arrays used by *interp_from_mf6_depvar_file()* to store spatial interpolation outcomes are usable by function *interp_to_obstime()*. Hence temporal interpolation to observation times can follow spatial interpolation to observation sites.
 
 ### Function Call
 
@@ -873,7 +873,7 @@ Similarly, the real-world coordinates of a structured-grid MODFLOW-USG model may
 
 Function *interp_to_obstime()* undertakes time-interpolation of quantities that were previously read from simulator output files, and possibly spatially interpolated to a set of user-supplied points. The times to which time-interpolation takes place are normally the times at which field observations were made.
 
-Arrays that store the outcomes of spatial interpolation or boundary flow extraction are useable by function *interp_to_obstime()*.
+Arrays that store the outcomes of spatial interpolation or boundary flow extraction are usable by function *interp_to_obstime()*.
 
 ### Function Call
 

pestutils/driver11.f90

@@ -191,7 +191,7 @@ program driver11
 446    format(' Enter inv power of distance: ')
        read(5,*,err=445) inverse_power
 
-! -- The name of the factor file is aquired.
+! -- The name of the factor file is acquired.
 
        write(6,*)
 450    write(6,460,advance='no')

pestutils/driver8.f90

@@ -249,7 +249,7 @@ program driver8
 240    format(' Enter maxpts, minpts: ')
        read(5,*,err=230) maxpts,minpts
 
-! -- The name of the factor file is aquired.
+! -- The name of the factor file is acquired.
 
        write(6,*)
 250    write(6,260,advance='no')

pestutils/driversubs.f90

@@ -53,7 +53,7 @@ subroutine getfile(ifail,cline,filename,ibeg,iend)
 !       filename: the name of the file read from the string
 !       ibeg: character position at which to begin search for filename
 !       iend: on input  - character position at which to end search for filename
-!             on output - character postion at which filename ends
+!             on output - character position at which filename ends
 
 
         integer, intent(out)               :: ifail

pestutils/funcproc1.f90

@@ -1369,7 +1369,7 @@ integer (kind=c_int) function install_mf6_grid_from_file(gridname,grbfile,
         mf6header(3)=adjustl(mf6header(3))
         if(mf6header(3)(1:4).ne.'NTXT')then
           write(amessage,130) trim(afile1)
-130       format('Third header line of file ',a,' expeced to begin with "NTXT".')
+130       format('Third header line of file ',a,' expected to begin with "NTXT".')
           go to 9890
         end if
         anum=adjustl(mf6header(3)(5:))
@@ -3130,7 +3130,7 @@ integer (kind=c_int) function extract_flows_from_cbc_file(     &
                      if((jcell.lt.0).or.(jcell.gt.ncell))then
                        call utl_num2char(jcell,atemp20)
                        write(amessage,250) trim(atemp20),trim(afile1)
-250                    format('Out of range cell number ',a,' enountered when reading flow ', &
+250                    format('Out of range cell number ',a,' encountered when reading flow ', &
                        'terms from file ',a,' using IMETH=3 method.')
                        go to 9890
                      end if

pestutils/funcproc2.f90

@@ -1841,7 +1841,7 @@ integer (kind=c_int) function build_covar_matrix_3d(        &
        integer(kind=c_int), intent(in)         :: vartype               ! 1:spher,2:exp,3:gauss,4:pow
        real(kind=c_double), intent(in)         :: nugget(npts)          ! nugget
        real(kind=c_double), intent(in)         :: sill(npts)            ! sill
-       real(kind=c_double), intent(in)         :: ahmax(npts),ahmin(npts),avert(npts) ! variogram "a" valies
+       real(kind=c_double), intent(in)         :: ahmax(npts),ahmin(npts),avert(npts) ! variogram "a" values
        real(kind=c_double), intent(in)         :: bearing(npts),dip(npts),rake(npts)  ! variogram angles
        integer(kind=c_int), intent(in)         :: ldcovmat              ! leading dimension of COVMAT
        real(kind=c_double), intent(out)        :: covmat(ldcovmat,npts) ! covariance matrix
@@ -2795,7 +2795,7 @@ integer (kind=c_int) function interpolate_blend_using_file(                    &
        go to 9890
 
 9400   write(amessage,9410) trim(afiletype),trim(facfile)
-9410   format('Out-of-range array index encounted while reading ',a,' factor file ',a,'.')
+9410   format('Out-of-range array index encountered while reading ',a,' factor file ',a,'.')
        go to 9890
 
 9890   interpolate_blend_using_file=1

pestutils/lapack1.F

@@ -10481,7 +10481,7 @@ SUBROUTINE DLASRT( ID, N, D, INFO )
 *     ..
 *     .. Executable Statements ..
 *
-*     Test the input paramters.
+*     Test the input parameters.
 *
       INFO = 0
       DIR = -1
@@ -14608,7 +14608,7 @@ SUBROUTINE DTRMV ( UPLO, TRANS, DIAG, N, A, LDA, X, INCX )
 *           ( 1 + ( n - 1 )*abs( INCX ) ).
 *           Before entry, the incremented array X must contain the n
 *           element vector x. On exit, X is overwritten with the
-*           tranformed vector x.
+*           transformed vector x.
 *
 *  INCX   - INTEGER.
 *           On entry, INCX specifies the increment for the elements of
@@ -15432,7 +15432,7 @@ INTEGER          FUNCTION IEEECK( ISPEC, ZERO, ONE )
 *  =========
 *
 *  ISPEC   (input) INTEGER
-*          Specifies whether to test just for inifinity arithmetic
+*          Specifies whether to test just for infinity arithmetic
 *          or whether to test for infinity and NaN arithmetic.
 *          = 0: Verify infinity arithmetic only.
 *          = 1: Verify infinity and NaN arithmetic.