add missing configure scripts to MANIFEST.in

.gitignore

@@ -15,6 +15,9 @@ tests/*.fai
 tests/pysam_data
 tests/cbcf_data
 
+samtools/config.h
+htslib/config.status
+htslib/config.h
 htslib/config.log
 htslib/config.mk
 pysam/config.py

MANIFEST.in

@@ -13,10 +13,12 @@ include pysam/c*.pyx
 include pysam/c*.c
 include pysam/*.c
 include pysam/*.h
+include samtools/configure
 include samtools/*.h
 include samtools/*/*.h
 include htslib/*.c
 include htslib/*.h
+include htslib/configure
 include htslib/htslib/*.h
 include htslib/cram/*.c
 include htslib/cram/*.h

htslib/config.h

@@ -0,0 +1,28 @@
+/* config.h.  Generated from config.h.in by configure.  */
+/* config.h.in -- template for config.h.  If you use configure, this file
+   provides #defines reflecting your configuration choices.  If you don't
+   run configure, suitable conservative defaults will be used.
+
+   This template file can be updated with autoheader, but do so carefully
+   as autoheader adds #defines such as PACKAGE_* that we don't want.  */
+
+/* Define if HTSlib should enable plugins. */
+#define ENABLE_PLUGINS 1
+
+/* Define if you have the Common Crypto library. */
+/* #undef HAVE_COMMONCRYPTO */
+
+/* Define to 1 if you have the `gmtime_r' function. */
+#define HAVE_GMTIME_R 1
+
+/* Define if you have libcrypto-style HMAC(). */
+#define HAVE_HMAC 1
+
+/* Define to 1 if iRODS file access is enabled. */
+/* #undef HAVE_IRODS */
+
+/* Define if libcurl file access is enabled. */
+#define HAVE_LIBCURL 1
+
+/* Define to 1 if you have a working `mmap' system call. */
+#define HAVE_MMAP 1

setup.py

@@ -558,7 +558,7 @@ def _compareAndCopy(src, srcdir, destdir, exclude):
 )
 
 metadata = {
-    'name': "psyam",
+    'name': "pysam",
     'version': version,
     'description': "pysam",
     'long_description': __doc__,