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Why dash symbol is not allowed in sample names? #52

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naumenko-sa opened this issue Oct 6, 2018 · 1 comment
Open

Why dash symbol is not allowed in sample names? #52

naumenko-sa opened this issue Oct 6, 2018 · 1 comment

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@naumenko-sa
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Hi Brent!

Thanks for creating vcf2db - it is super helpful!

fix_sample_name substitutes X-Y in the sample name to X_Y.

Why it is not possible to have "-" in the sample name? It breaks some downstream scripts when sample name in a vcf file is with "-" and in the database it is without "-".

Is there any workaround to keep the sample name exactly as in the vcf file?

Sergey

@nswh
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nswh commented Apr 21, 2020

Same question! Can we just comment out this part of script?

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