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23 Open 37 Closed
23 Open 37 Closed
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Issues list

vcf2db does not create genotypes table
#71 opened Jan 26, 2023 by ramashka328
1
Issue querying db's made with latest cyvcf2
#69 opened Mar 17, 2022 by matthdsm
can't get a working pair of vcf2db - gemini
#68 opened Feb 23, 2022 by naumenko-sa
2
Cannot parse VEP Mastermind CSQ tags which contains URL
#67 opened Mar 9, 2021 by nswh
1
Import Funcotator annotated output into GeMINI using vcf2db
#66 opened Jul 20, 2020 by sprakashUTH
Differences in impact severity between gemini and vcf2db on vep 'MODIFIER' impact variants
#62 opened Oct 1, 2019 by nvteja
Parse error (with example) on somatic flag
#61 opened Aug 27, 2019 by lbeltrame
2
vcf2db can't handle records that were skipped by vcfanno
#59 opened May 21, 2019 by lbeltrame
1
Allow skipping bad records instead of raising exceptions
#58 opened May 14, 2019 by lbeltrame
3
issue with creating database
#57 opened May 2, 2019 by atimms
9
Constraints violation when loading a merged VCF
#55 opened Feb 13, 2019 by lbeltrame
5
Why dash symbol is not allowed in sample names?
#52 opened Oct 6, 2018 by naumenko-sa
1
Column type set to VARCHAR(10) despite setting Type=Float in VCF file
#47 opened Aug 6, 2018 by marivalen
3
ImportError: No module named _snappy_cffi
#46 opened Jul 16, 2018 by snashraf
16
Problem with vct to db conversion
#39 opened Feb 9, 2018 by alphahmed18
2
vcf2db without samples
#38 opened Feb 1, 2018 by parkesK
3
Feature requests for VCF2DB compatible with GEMINI built-in tools
#36 opened Nov 21, 2017 by Phillip-a-richmond
8
Larger file not accepted
#35 opened Oct 18, 2017 by marivalen
2
Ability to add variants to existing database without overwriting
#17 opened Nov 11, 2016 by ndrein
1
gene_summary and gene_detailed in Gemini
#15 opened Oct 19, 2016 by a113n
2
gene-based columns
#10 opened Aug 27, 2016 by brentp
Warning on incompatible multiallelic VCF
#3 opened Apr 14, 2016 by VelNZ
1
mechanism to handle entries with Number=X where X > 1
#1 opened Mar 10, 2016 by brentp
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