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QuPath

Open source software for bioimage analysis
README.md

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  1. qupath qupath Public

    QuPath - Open-source bioimage analysis for research

    Java 1.1k 295

  2. qupath-docs qupath-docs Public

    QuPath documentation

    Python 19 24

  3. qupath-extension-stardist qupath-extension-stardist Public

    QuPath extension to run StarDist nucleus detection

    Java 39 7

  4. qupath-extension-djl qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    Java 6 6

  5. qupath-extension-omero-web qupath-extension-omero-web Public

    QuPath extension to work with images through OMERO's web API

    Java 9 11

  6. qupath-extension-bioimageio qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    Java 4 4

Repositories

Showing 10 of 45 repositories
  • qupath.github.io Public

    GitHub pages site

    qupath/qupath.github.io’s past year of commit activity
    SCSS 2 MIT 5 0 0 Updated Apr 11, 2025
  • qupath Public

    QuPath - Open-source bioimage analysis for research

    qupath/qupath’s past year of commit activity
    Java 1,141 GPL-3.0 295 39 3 Updated Apr 11, 2025
  • qupath-catalog Public

    The catalog containing QuPath extensions developed by the QuPath team

    qupath/qupath-catalog’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Apr 11, 2025
  • qupath-extension-stardist Public

    QuPath extension to run StarDist nucleus detection

    qupath/qupath-extension-stardist’s past year of commit activity
    Java 39 Apache-2.0 7 2 0 Updated Apr 11, 2025
  • qupath-extension-align Public

    QuPath extension to interactively align images

    qupath/qupath-extension-align’s past year of commit activity
    Java 23 GPL-3.0 8 0 3 Updated Apr 11, 2025
  • qupath-extension-wsinfer Public

    QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

    qupath/qupath-extension-wsinfer’s past year of commit activity
    Java 24 Apache-2.0 9 3 1 Updated Apr 11, 2025
  • qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    qupath/qupath-extension-bioimageio’s past year of commit activity
    Java 4 Apache-2.0 4 2 0 Updated Apr 11, 2025
  • extension-manager Public

    A manager for catalogs and extensions.

    qupath/extension-manager’s past year of commit activity
    Java 0 Apache-2.0 2 0 0 Updated Apr 11, 2025
  • qupath-extension-instanseg Public

    The official QuPath extension for InstanSeg

    qupath/qupath-extension-instanseg’s past year of commit activity
    Java 16 Apache-2.0 6 4 0 Updated Apr 11, 2025
  • qupath-extension-py4j Public

    A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)

    qupath/qupath-extension-py4j’s past year of commit activity
    Java 0 Apache-2.0 2 0 0 Updated Apr 11, 2025
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