Merge branch 'main' into patch-1

.Rbuildignore

@@ -27,3 +27,5 @@ _cache$
 ^\.vscode$
 ^vignettes/.*\.html$
 ^CRAN-SUBMISSION$
+^\.aviator/config\.yml$
+^index\.md$

.aviator/config.yml

@@ -0,0 +1,43 @@
+merge_rules:
+  labels:
+    trigger: mergequeue
+    skip_line: mergequeue-priority
+    merge_failed: blocked
+    skip_delete_branch: ''
+  update_latest: true
+  delete_branch: false
+  use_rebase: true
+  publish_status_check: ready
+  status_comment:
+    publish: always
+    open_message: ''
+    queued_message: ''
+    blocked_message: ''
+  enable_comments: true
+  ci_timeout_mins: 0
+  require_all_checks_pass: true
+  require_skip_line_reason: false
+  preconditions:
+    validations: []
+    number_of_approvals: 0
+    required_checks: []
+    use_github_mergeability: true
+    conversation_resolution_required: false
+  merge_mode:
+    type: default
+  auto_update:
+    enabled: true
+    label: 'mergequeue'
+    max_runs_for_update: 0
+  merge_commit:
+    use_title_and_body: false
+  merge_strategy:
+    name: merge
+    override_labels:
+      squash: ''
+      merge: ''
+      rebase: ''
+  base_branches:
+  - main
+scenarios: []
+version: 1.1.0

.github/workflows/R-CMD-check-dev.yaml

@@ -13,22 +13,20 @@ name: rcc dev
 
 jobs:
   matrix:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-22.04
     outputs:
       matrix: ${{ steps.set-matrix.outputs.matrix }}
 
     name: Collect deps
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: ./.github/workflows/rate-limit
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
 
       - uses: r-lib/actions/setup-r@v2
-        with:
-          install-r: false
 
       - id: set-matrix
         uses: ./.github/workflows/dep-matrix
@@ -63,14 +61,13 @@ jobs:
       fail-fast: false
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: ./.github/workflows/custom/before-install
         if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
 
       - uses: ./.github/workflows/install
         with:
-          install-r: false
           cache-version: rcc-dev-base-1
           needs: check
           extra-packages: "any::rcmdcheck any::remotes ."
@@ -101,7 +98,7 @@ jobs:
 
     runs-on: ubuntu-22.04
 
-    name: ${{ matrix.package }}
+    name: 'rcc-dev: ${{ matrix.package }}'
 
     # Begin custom: services
     # End custom: services
@@ -111,14 +108,13 @@ jobs:
       matrix: ${{fromJson(needs.matrix.outputs.matrix)}}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: ./.github/workflows/custom/before-install
         if: hashFiles('.github/workflows/custom/before-install/action.yml') != ''
 
       - uses: ./.github/workflows/install
         with:
-          install-r: false
           cache-version: rcc-dev-${{ matrix.package }}-1
           needs: check
           extra-packages: "any::rcmdcheck any::remotes ."

.github/workflows/R-CMD-check-status.yaml

@@ -0,0 +1,75 @@
+# Workflow to update the status of a commit for the R-CMD-check workflow
+# Necessary because remote PRs cannot update the status of the commit
+on:
+  workflow_run:
+    workflows:
+      - rcc
+    types:
+      - requested
+      - completed
+
+name: rcc-status
+
+jobs:
+  rcc-status:
+    runs-on: ubuntu-24.04
+
+    name: "Update commit status"
+
+    steps:
+      - name: "Update commit status"
+        # Only run if triggered by rcc workflow
+        if: github.event.workflow_run.name == 'rcc'
+        env:
+          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          set -x
+
+          if [ "${{ github.event.workflow_run.status }}" == "completed" ]; then
+            if [ "${{ github.event.workflow_run.conclusion }}" == "success" ]; then
+              state="success"
+            else
+              state="failure"
+            fi
+
+            # Read artifact ID
+            artifact_id=$(gh api \
+              -H "Accept: application/vnd.github+json" \
+              -H "X-GitHub-Api-Version: 2022-11-28" \
+              repos/${{ github.repository }}/actions/runs/${{ github.event.workflow_run.id }}/artifacts | jq -r '.artifacts[] | select(.name == "rcc-smoke-sha") | .id')
+
+            if [ -n "${artifact_id}" ]; then
+              # Download artifact
+              curl -L -o rcc-smoke-sha.zip \
+                -H "Accept: application/vnd.github+json" \
+                -H "Authorization: Bearer ${GH_TOKEN}" \
+                -H "X-GitHub-Api-Version: 2022-11-28" \
+                https://api.github.com/repos/${{ github.repository }}/actions/artifacts/${artifact_id}/zip
+
+              # Unzip artifact
+              unzip rcc-smoke-sha.zip
+
+              # Read artifact
+              sha=$(cat rcc-smoke-sha.txt)
+
+              # Clean up
+              rm rcc-smoke-sha.zip rcc-smoke-sha.txt
+            fi
+          else
+            state="pending"
+          fi
+
+          if [ -z "${sha}" ]; then
+            sha=${{ github.event.workflow_run.head_sha }}
+          fi
+
+          html_url=${{ github.event.workflow_run.html_url }}
+          description=${{ github.event.workflow_run.name }}
+
+          gh api \
+            --method POST \
+            -H "Accept: application/vnd.github+json" \
+            -H "X-GitHub-Api-Version: 2022-11-28" \
+            repos/${{ github.repository }}/statuses/${sha} \
+            -f "state=${state}" -f "target_url=${html_url}" -f "description=${description}" -f "context=rcc"
+        shell: bash