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Achievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Achievements

Achievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

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@ncbi @BioContainers @bioconda

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  • rnaquast Public

    Forked from ablab/rnaquast

    Quality assessment of de novo transcriptome assemblies from RNA-Seq data

    Python Other Updated Mar 22, 2023

  • HDXer Public

    Forked from Lucy-Forrest-Lab/HDXer

    HDXer is a package to compute Hydrogen-Deuterium exchange data from biomolecular simulations, compare to experiment, and perform ensemble refinement to fit a structrual ensemble to the experimental…

    Python BSD 3-Clause "New" or "Revised" License Updated Mar 21, 2023

  • bayesian_hdx Public

    Forked from salilab/bayesian_hdx

    Support code for HDX data reduction

    Python GNU Lesser General Public License v2.1 Updated Oct 22, 2021

  • pm4ngs-rnaseq-tutorial Public

    Makefile GNU General Public License v3.0 Updated Jun 28, 2021

  • staged-recipes Public

    Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    Python BSD 3-Clause "New" or "Revised" License Updated Jun 21, 2021

  • cwl-airflow Public

    Forked from Barski-lab/cwl-airflow

    Python package to extend Airflow functionality with CWL1.1 support

    Python Apache License 2.0 Updated Sep 21, 2020

  • scrnaseq Public

    Forked from nf-core/scrnaseq

    A single-cell RNAseq pipeline for 10X genomics data

    Nextflow MIT License Updated Mar 30, 2020

  • idr Public

    Forked from kundajelab/idr

    IDR

    Python GNU General Public License v2.0 Updated Sep 3, 2019

  • RNASeqWF Public

    This code shows the validation of Differential Gene Expression Analysis from RNASeq data using as quantificator tools TPMCalculator

    jupyter-notebook rnaseq cwl
    HTML 1 Other Updated Jan 15, 2019

  • zenbu-docker Public

    Dockerfile Updated Nov 8, 2018

  • containers Public

    Forked from BioContainers/containers

    Bioinformatics containers

    Dockerfile Apache License 2.0 Updated Sep 7, 2018

  • DiffExpIR Public

    Differentially expressed intron retention

    C++ Other Updated Mar 16, 2018

  • birdseed2vcf Public

    Forked from ding-lab/birdseed2vcf

    Convert birdseed variant file with genotypes to a VCF file

    Python Updated Feb 22, 2018

  • sandbox Public

    Forked from viv-1/sandbox

    work place for new or broken containers

    Perl Apache License 2.0 Updated Nov 6, 2017

  • DiffExpIRWeb Public

    This is a Django web app to visualize differentially expressed intron retention detected by DiffExpIR

    HTML Updated Oct 30, 2017

  • GoodDoc Public

    Forked from NCBI-Hackathons/GoodDoc

    A Template for Clear and Simple Documentation of Bioinformatics Code

    MIT License Updated Oct 11, 2017

  • diffexpIR-notebook Public

    This repository includes the Jupyter Notebooks for detecting Differentially Expressed Intron Retention from RNA-Seq data

    Python Other Updated Sep 27, 2017

  • taxoner Public

    C 4 2 Updated Sep 23, 2017

  • bamtools Public

    Forked from pezmaster31/bamtools

    C++ API & command-line toolkit for working with BAM data

    C++ MIT License Updated May 30, 2017

  • jbiowh-persistence Public

    Java 1 Updated Mar 8, 2017

  • bendit Public

    Prediction of DNA curvature from DNA sequences

    C 1 1 Updated Jan 30, 2017

  • trans-annot-notebook Public

    C++ 2 1 Other Updated Nov 14, 2016

  • bioNotebook Public

    Python 1 GNU General Public License v3.0 Updated Sep 29, 2016

  • ncservice Public

    CSS Updated May 13, 2016

  • gTools Public

    C GNU General Public License v3.0 Updated Dec 10, 2015

  • jbiowh-webservices Public

    Java 1 Updated Jul 20, 2015

  • jbiowh-webservices-client Public

    Java 1 Updated Jul 20, 2015

  • jbiowh-desktop Public

    Java 1 Updated Jul 20, 2015

  • jbiowh-parser Public

    Java 1 Updated Jul 20, 2015

  • jbiowh-dbms Public

    Java 1 Updated Jul 20, 2015