Error in plot_clusters() in plot_cn_1d2d.py due to change in pandas df.groupby()

[BramLimSJ]

Similar issue to an error which I posted earlier.

An error occurs in line 526 of plot_cn_1d2d.py when there is only one clone detected:

File "/software/team274/bl10/miniconda3/envs/hatchet/lib/python3.9/site-packages/hatchet/utils/plot_cn_1d2d.py", line 521, in <listcomp> my_colors = [cmap(mapping[r]) for r in bbc_.cn_clone1] KeyError: '1|1'

This is because the key in mapping is '('1|1',)' instead of '1|1'.

The error originated from line 78 of plot_cn_1d2d.py:

_, mapping = reindex([k for k, _ in bbc.groupby([f'cn_clone{i + 1}' for i in range(n_clones)])])

where a length-1 list is fed into bbc.groupby().

The newer version of pandas will return a length-1 tuple instead of a string, as highlighted here

The error can be overcome by deleting this:

if n_clones == 1: my_colors = [cmap(mapping[r]) for r in bbc_.cn_clone1] else: my_colors = [cmap(mapping[tuple(r)]) for _, r in bbc_[[f'cn_clone{i + 1}' for i in range(n_clones)]].iterrows()]

and replacing with:

my_colors = [cmap(mapping[tuple(r)]) for _, r in bbc_[[f'cn_clone{i + 1}' for i in range(n_clones)]].iterrows()]

A similar error occurs with plot_genome() in plot_cn_1d2d.py.

[immuneAI]

@balabanmetin @mmyers1 @simozacca I'm facing the same issue with v2.0.1. Any more update after this?

[immuneAI]

@balabanmetin @mmyers1 @simozacca I'm facing the same issue with v2.0.1. Any more update after this?

Any update on this? i'm haivng the same issue with 2|2 clones