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56 Open 82 Closed
56 Open 82 Closed
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Issues list

AssertionError [W::tbx_parse1] Coordinate <= 0 detected. Did you forget to use the -0 option?
#232 opened Nov 6, 2024 by immuneAI
1
Typo in the cluster_bin section of the hatchet.ini template file
#231 opened Oct 22, 2024 by lconde-ucl
HATCHet fails with new version of bcftools 1.21 bug Something isn't working
#227 opened Oct 12, 2024 by simozacca
@vineetbansal @balabanmetin @mmyers1
Using other reference genome builds
#226 opened Oct 6, 2024 by mhSepehri
Incorrect CNV calculation of chrX and chrY
#225 opened Sep 23, 2024 by ywzhang071394
Issue runing Hatchet2 with hg38 reference_version
#223 opened Jul 17, 2024 by wchukwu
5
About "download_panel"
#222 opened Jun 26, 2024 by SuqinYang
add flag and make GC correction optional
#217 opened Apr 18, 2024 by mmyers1
explore using more recent SHAPEIT version
#214 opened Apr 10, 2024 by mmyers1
resolve issue with CI testing python 3.7
#213 opened Apr 6, 2024 by mmyers1
Length of values does not match length of index
#209 opened Mar 11, 2024 by tyamaguchi-ucla
HATCHet2 RDR/BAF locally-aware clustering error with sparse bins
#206 opened Feb 8, 2024 by aganezov
can i ues this method for checking WGD of other species
#205 opened Jan 15, 2024 by WJT0925
Set default value for ILP time limit
#204 opened Jan 11, 2024 by mmyers1
Specifying size for WES samples in count-reads
#199 opened Nov 20, 2023 by bjlerman
1
Error when no reads are recorded in tumor.bed before/after centromere location
#198 opened Nov 14, 2023 by ronkesm
2
Error in plot_clusters() in plot_cn_1d2d.py due to change in pandas df.groupby()
#197 opened Nov 2, 2023 by BramLimSJ
2
Error in read_bb() in cluster_bins.py due to change in pandas df.groupby()
#196 opened Oct 31, 2023 by BramLimSJ
4
Full documentation is not in fact available from cs.brown.edu
#195 opened Oct 18, 2023 by ttriche
3
Failed to liftover chromosomes with picard
#192 opened Jul 22, 2023 by tahashmi
Running HATCHet with phasing
#191 opened Jul 8, 2023 by um-pdavila
Download 1000GP_Phase3
#190 opened Jun 9, 2023 by yqkiuo
Falling at plot-bin step, even after adjusting -tR and -tB
#189 opened Jun 2, 2023 by immuneAI
tabix parse error and cluster-bins failure
#188 opened May 31, 2023 by csmoreno
4
Phasing fails
#187 opened May 3, 2023 by csmoreno
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