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About "download_panel" #222

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SuqinYang opened this issue Jun 26, 2024 · 0 comments
Open

About "download_panel" #222

SuqinYang opened this issue Jun 26, 2024 · 0 comments

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@SuqinYang
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Hi, I met the following error when running python3 -m hatchet run hatchet.ini
The step "download_panel" requires that the variable "refpaneldir" indicates the directory in which to store the reference panel.

Looks like I didn't download 1000GP_Phase3 file. Then I ran the following code: python3 -m hatchet run hatchet_new.ini with the hatchet_new.ini.
The download_panel part of hatchet_new.ini:
[download_panel]
ref_panel = 1000GP_Phase3
refpaneldir =./

But it's downloading too slowly, I wonder if there is any other way to download this file? What does the full files look like after downloading? And how to write it in hatchet.ini file after downloading, can you give me an example? Thank you so much!

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