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Add IDS fitting function #273

Merged
merged 19 commits into from
Jan 25, 2024
Merged

Add IDS fitting function #273

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b76d5d3
Add IDS function and some methods
kenkellner Jan 13, 2022
e6384b0
Add update and parboot methods
kenkellner Jan 13, 2022
8d5501d
Updates to summary method
kenkellner Jan 14, 2022
64544cc
Allow estimation of availability...doesn't really work at the moment
kenkellner Jan 26, 2022
69accf1
Remove accidental use of global variable
kenkellner Feb 1, 2022
8b46549
Fix names, fitted, getP, predict methods to handle availability
kenkellner Feb 3, 2022
0b54911
Add methods for simulating IDS datasets
kenkellner Feb 4, 2022
8c0957e
Merge remote-tracking branch 'upstream/master' into IDS
kenkellner Mar 28, 2022
f53ca26
Merge remote-tracking branch 'upstream/master' into IDS
kenkellner Apr 7, 2022
0a3449a
Add documentation
kenkellner Apr 7, 2022
c8a4e32
Fix bug when selecting a single site in a umf
kenkellner Apr 8, 2022
d7d4f05
Merge branch 'master' into IDS
kenkellner Oct 21, 2022
be5cc1f
Fix some post-merge problems
kenkellner Oct 21, 2022
7d12405
Don't allow availability estimation when there is DND data
kenkellner Jun 12, 2023
15e8a28
Merge remote-tracking branch 'upstream/master' into IDS
kenkellner Jun 12, 2023
7454da5
Merge pull request #254 from kenkellner/IDS
kenkellner Jun 18, 2023
303c291
Merge branch 'master' into IDS
kenkellner Jan 18, 2024
d5ed5f6
Some bugfixes and add tests
kenkellner Jan 18, 2024
8c9dc1c
Add tests
kenkellner Jan 23, 2024
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5 changes: 3 additions & 2 deletions DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: unmarked
Version: 1.4.1
Date: 2024-01-08
Version: 1.4.1.9001
Date: 2024-01-23
Type: Package
Title: Models for Data from Unmarked Animals
Authors@R: c(
Expand Down Expand Up @@ -53,6 +53,7 @@ Collate: 'classes.R' 'unmarkedEstimate.R' 'mapInfo.R' 'unmarkedFrame.R'
'unmarkedCrossVal.R' 'piFun.R' 'vif.R' 'makePiFun.R' 'posteriorSamples.R'
'nmixTTD.R'
'gdistremoval.R'
'IDS.R'
'plotEffects.R'
'mixedModelTools.R'
'power.R'
Expand Down
5 changes: 3 additions & 2 deletions NAMESPACE
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Expand Up @@ -23,7 +23,8 @@ importFrom(Rcpp, evalCpp)
export(occu, occuFP, occuRN, pcount, pcountOpen, multinomPois, distsamp,
colext, gmultmix, gdistsamp, gpcount, occuPEN, occuPEN_CV, occuMulti,
occuMS, computeMPLElambda, pcount.spHDS, occuTTD, distsampOpen,
multmixOpen, nmixTTD, gdistremoval, goccu, occuCOP)
multmixOpen, nmixTTD, gdistremoval, goccu, occuCOP, IDS)

export(removalPiFun, doublePiFun)
export(makeRemPiFun, makeCrPiFun, makeCrPiFunMb, makeCrPiFunMh)

Expand All @@ -32,7 +33,7 @@ exportClasses(unmarkedFit, unmarkedFitOccu, unmarkedFitOccuFP, unmarkedFitDS,
unmarkedFitPCount, unmarkedFitMPois, unmarkedFitPCO,
unmarkedFrameDSO, unmarkedFitDSO,
unmarkedFrameMMO, unmarkedFitMMO,
unmarkedFitOccuMulti,
unmarkedFitOccuMulti, unmarkedFitIDS,
unmarkedFrame, unmarkedFrameOccu, unmarkedFramePCount,
unmarkedFrameMPois, unmarkedFrameDS, unmarkedMultFrame,
unmarkedFrameGMM, unmarkedFrameGDS, unmarkedFramePCO,
Expand Down
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