fix #3; update install instructions in README

README.md

@@ -19,12 +19,9 @@ The package has been renamed to `wsi`.
 
 While the repository is private, make sure you [exchange SSH keys of the machine with Github.com](https://docs.github.com/en/authentication/connecting-to-github-with-ssh/adding-a-new-ssh-key-to-your-github-account).
 
-Then simply install with `pip`:
+Then simply install with `pip` (make sure you have a recent enough version with `pip install pip -U`:
 ```bash
-# pip install git+ssh://[email protected]:rendeirolab/wsi.git
-git clone [email protected]:rendeirolab/wsi.git
-cd wsi
-pip install .
+pip install git+https://github.com/rendeirolab/wsi.git
 ```
 
 Note that the package uses setuptols-scm for version control and therefore the installation source needs to be a git repository (a zip file of source code won't work).
@@ -125,6 +122,16 @@ gdata = slide.as_torch_geometric_data(feats, coords)  # from existing features a
 gdata = slide.as_torch_geometric_data(model_name='resnet18')  # without
 ```
 
+## Development
+
+`wsi` will not be providing new features and future maintenance will be restricted to bugs. Please refer to our newer project [Lazyslide](https://github.com/rendeirolab/LazySlide) for a more modern, interoperable package for the analysis of whole-slide images.
+
+
+To contribute bug maintenance, clone the repository, open an issue in the [issue tracker](https://github.com/rendeirolab/wsi/issues), and submit a pull request.
+```
+git clone [email protected]:rendeirolab/wsi.git
+```
+
 ## Reference
 Please cite the [paper of the original authors](https://www.nature.com/articles/s41551-020-00682-w):
 

wsi/wsi.py

@@ -1843,7 +1843,7 @@ def inference(
         """
         from typing import cast
         import torch
-        from tqdm_loggable.auto import tqdm
+        from tqdm.auto import tqdm
 
         if isinstance(model, torch.nn.Module):
             model = cast(torch.nn.Module, model)