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| on: | |
| push: | |
| pull_request: | |
| name: build_singularity | |
| jobs: | |
| build_singularity: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| singularity_version: | |
| - '3.7.4' | |
| container: | |
| image: quay.io/singularity/singularity:v${{ matrix.singularity_version }} | |
| options: --privileged | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Show singularity version | |
| run: singularity version | |
| - name: Build container | |
| run: ./scripts/build_singularity_container.sh | |
| - name: Test container, must detect MHCnuggets | |
| run: singularity test mhcnuggetsr.sif | |
| - name: Show help of container | |
| run: singularity run-help mhcnuggetsr.sif | |
| - name: Show script | |
| run: cat scripts/demo_mhcnuggetsr.R | |
| - name: Run container | |
| run: cat scripts/demo_mhcnuggetsr.R | ./mhcnuggetsr.sif | |