Merge branch 'master' of https://github.com/richelbilderbeek/mhcnuggetsr #131
richelbilderbeekAnnotations
12 warnings
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R-CMD-check
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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r-lib/actions/setup-pandoc@v1 is deprecated.
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.
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R-CMD-check:
R/check_mhc_class.R#L14
file=R/check_mhc_class.R,line=14,col=4,[indentation_linter] Indentation should be 6 spaces but is 4 spaces.
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R-CMD-check:
R/check_mhcnuggets_installation.R#L19
file=R/check_mhcnuggets_installation.R,line=19,col=24,[object_usage_linter] no visible global function definition for 'get_default_mhcnuggetsr_folder'
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R-CMD-check:
R/check_mhcnuggets_installation.R#L20
file=R/check_mhcnuggets_installation.R,line=20,col=22,[object_usage_linter] no visible global function definition for 'get_default_orm_folder_name'
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R-CMD-check:
R/check_mhcnuggets_installation.R#L23
file=R/check_mhcnuggets_installation.R,line=23,col=6,[indentation_linter] Indentation should be 4 spaces but is 6 spaces.
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R-CMD-check:
R/create_mhcnuggets_options.R#L27
file=R/create_mhcnuggets_options.R,line=27,col=24,[object_usage_linter] no visible global function definition for 'get_default_mhcnuggets_folder'
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R-CMD-check:
R/create_mhcnuggets_options.R#L28
file=R/create_mhcnuggets_options.R,line=28,col=20,[object_usage_linter] no visible global function definition for 'get_mhcnuggets_url'
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R-CMD-check:
R/create_test_mhcnuggets_options.R#L18
file=R/create_test_mhcnuggets_options.R,line=18,col=24,[object_usage_linter] no visible global function definition for 'get_default_mhcnuggets_folder'
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R-CMD-check:
R/create_test_mhcnuggets_options.R#L19
file=R/create_test_mhcnuggets_options.R,line=19,col=20,[object_usage_linter] no visible global function definition for 'get_mhcnuggets_url'
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R-CMD-check:
R/get_default_mhcnuggets_folder.R#L11
file=R/get_default_mhcnuggets_folder.R,line=11,col=24,[object_usage_linter] no visible global function definition for 'get_default_mhcnuggetsr_folder'
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R-CMD-check:
R/get_example_filename.R#L15
file=R/get_example_filename.R,line=15,col=24,[object_usage_linter] no visible global function definition for 'get_default_mhcnuggetsr_folder'
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