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Releases: rikuu/Gap2Seq

v3.1

29 Aug 18:24
@rikuu rikuu
v3.1
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Changes in since 3.0:

  • When classifying filled bases into safe and unsafe bases, all paths within the allowed interval are now considered. In the previous version, only paths with optimal length were considered. The old behaviour can still be invoked using the parameter -best-only.

  • ReadFilter now infers the read length. This breaks compatibility with old read library configurations.

  • Read filtering is slightly improved for gap filling. Unchanged for insertion genotyping.

  • Unmapped reads are now filtered from alignments only once per read library. Speeds up gap filling around 30% for large scaffolds.

  • Using the wrapper script without alignments now correctly delegates all processing to Gap2Seq-core.

  • Updated to GATB-core 1.4.1 and HTSlib to 1.8.

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