Reactome Anywidget

This is a widget built on AnyWidget that allows you to embed a Reactome pathway diagram in environments like JupyterLab or Marimo notebooks.

Installation

pip install reactome-anywidget

Usage

JupyterLab

from reactome_anywidget import ReactomeWidget
ReactomeWidget(diagramId="R-HSA-199420", width=800, height=600)

Marimo

import marimo as mo
from reactome_anywidget import ReactomeWidget

mo.ui.anywidget(ReactomeWidget, diagramId="R-HSA-199420", width=800, height=600).center()

Known Issues

This widget does not fully work in Marimo. The diagram is displayed, but search functionality won't render. This is possibly due to the fact that Marimo allows creating elements in a shadow DOM, which the Reactome widget cannot access.