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rpetit3 committed Jul 23, 2024
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🐪 camlhmp 🐪 - Classification through yAML Heuristic Mapping Protocol (__yeah, it's a stretch to
make sure 🐪 is in the name!__)
[![Gitpod ready-to-code](https://img.shields.io/badge/Gitpod-ready--to--code-908a85?logo=gitpod)](https://gitpod.io/#https://github.com/rpetit3/camlhmp)

# camlhmp

🐪 camlhmp 🐪 - Classification through yAML Heuristic Mapping Protocol

`camlhmp` is a tool for generating organism typing tools from YAML schemas. The idea came
up from discussions with Tim Read about the need for a tool that would allow researchers
to more easily define typing schemas for their organisms of interest. YAML seemed like a
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with the tools necessary tools to create and maintain their own schemas. This I believe will
ensure the schemas remain up to date with the latest developments in its respective field.

Additionally, this really aroses from a practical need to streamline my maintenance of
Additionally, this really arose from a practical need to streamline my maintenance of
multiple organism typing tools. Long-term maintenance of these tools is a challenge, and
I think `camlhmp` will help me to keep them up-to-date and consistent.

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If you make use of this tool, please cite the following:

* **[BLAST](https://blast.ncbi.nlm.nih.gov/Blast.cgi)**
- __camlhmp__
_Petit III RA [camlhmp: Classification through yAML Heuristic Mapping Protocol](https://github.com/rpetit3/camlhmp) (GitHub)_

- _[BLAST](https://blast.ncbi.nlm.nih.gov/Blast.cgi)__
Basic Local Alignment Search Tool
*Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL [BLAST+: architecture and applications](http://dx.doi.org/10.1186/1471-2105-10-421). BMC Bioinformatics 10, 421 (2009)*
_Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL [BLAST+: architecture and applications](http://dx.doi.org/10.1186/1471-2105-10-421). BMC Bioinformatics 10, 421 (2009)_

## Naming

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