panppbio

• Some routine ideas:
  • Gather species list
    • Amphibia
    • Birds
    • Crocs
    • Fishes
    • Lizards
    • Mammals
    • Snakes
    • Turtles
  • BOLD Systems
    • Collect the data based on two searches:
      • Class + Country´
      • Species names
  • NCBI
    • Same as above
  • Naming corretion and updates
  • IUCN
    • Status, spatial and trait information
  • GBIF
    • Trait and spatial information

Installation

You can install the development version of panppbio from GitHub with:

# install.packages("devtools")
devtools::install_github("rsilveirafh/panppbio")

Example

This is a basic example which shows you how to solve a common problem:

# library(panppbio)
## basic example code

What is special about using README.Rmd instead of just README.md? You can include R chunks like so:

summary(cars)
#>      speed           dist       
#>  Min.   : 4.0   Min.   :  2.00  
#>  1st Qu.:12.0   1st Qu.: 26.00  
#>  Median :15.0   Median : 36.00  
#>  Mean   :15.4   Mean   : 42.98  
#>  3rd Qu.:19.0   3rd Qu.: 56.00  
#>  Max.   :25.0   Max.   :120.00

You’ll still need to render README.Rmd regularly, to keep README.md up-to-date. devtools::build_readme() is handy for this. You could also use GitHub Actions to re-render README.Rmd every time you push. An example workflow can be found here: https://github.com/r-lib/actions/tree/v1/examples.

You can also embed plots, for example:

In that case, don’t forget to commit and push the resulting figure files, so they display on GitHub and CRAN.