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54 Open 114 Closed
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Issues list

Performance degradation with VCF Reader Apple Silicon
#464 opened Jan 27, 2025 by mwiewior
Question about bam::IndexedReader::fetch()
#463 opened Jan 26, 2025 by epiliper
Question about building rust-htslib with conda-installed dependencies
#462 opened Jan 16, 2025 by wm75
1
[deps] idna currently used is impacted by RUSTSEC-2024-0421
#460 opened Dec 10, 2024 by sjlangley
1
Multiple unsound problems in bcf crate
#459 opened Dec 5, 2024 by lwz23
7
Is there any way to tell where in the file the reader is ?
#456 opened Nov 27, 2024 by JulianDicken
Update libdeflate (mirroring issue in hts-sys)
#454 opened Nov 20, 2024 by davidlougheed
rust-htslib panics on bam record.contig() call
#446 opened Nov 5, 2024 by xosxos
1
[Feature request] query_position_or_next method for Alignment
#445 opened Oct 29, 2024 by Crispy13
Cargo test leading to "unsafe precondition(s) violated"
#442 opened Oct 11, 2024 by ebioman
Embedding the reference into CRAM outputs (embed_ref=1)
#441 opened Oct 9, 2024 by mrvollger
Weird reference_end() value
#436 opened Jul 9, 2024 by Crispy13
0.47.0 introduced a dependency on libclang
#434 opened Jul 5, 2024 by DaGaMs
5
Modifying existing bam header line
#433 opened May 15, 2024 by rickymagner
subsetting samples
#429 opened Apr 19, 2024 by brentp
Compiler issue on AArch64 Linux
#425 opened Mar 19, 2024 by jakobnissen
1
error: could not compile rust-htslib
#423 opened Feb 24, 2024 by knakamura6222053
How to access read group info from Record?
#422 opened Feb 23, 2024 by Crispy13
2
Seek/Tell for BGZF Module
#416 opened Jan 10, 2024 by rmhubley
[Feature Request] An option for pileup similar with truncate in pysam
#414 opened Dec 16, 2023 by Crispy13
BCF reader partial unpacking for site-only queries
#411 opened Oct 26, 2023 by bguo068
Are there some default filters in alignment pileup?
#409 opened Oct 1, 2023 by huangnengCSU
Panic on omitted trailing FORMAT fields
#407 opened Aug 17, 2023 by fennerm
2
How to operate on Format/Info fields for Records?
#405 opened Aug 11, 2023 by rickymagner
2
Reading bam from s3
#404 opened Aug 10, 2023 by wdecoster
3
ProTip! Updated in the last three days: updated:>2025-01-29.