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@saalfeldlab

Saalfeld Lab

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  1. n5 n5 Public

    Not HDF5

    Java 163 22

  2. paintera paintera Public

    Java 100 17

  3. render render Public

    Render transformed image tiles

    Java 34 32

  4. stitching-spark stitching-spark Public

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    Java 34 10

  5. bigwarp bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    Java 27 14

  6. n5-viewer n5-viewer Public

    BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

    Java 18 11

Repositories

Showing 10 of 106 repositories
  • render Public

    Render transformed image tiles

    saalfeldlab/render’s past year of commit activity
    Java 34 GPL-2.0 32 29 6 Updated Nov 25, 2024
  • hot-knife Public
    saalfeldlab/hot-knife’s past year of commit activity
    Java 4 GPL-2.0 7 1 2 Updated Nov 23, 2024
  • n5-ij Public

    ImageJ convenience layer for N5

    saalfeldlab/n5-ij’s past year of commit activity
    Java 15 BSD-2-Clause 12 22 (1 issue needs help) 2 Updated Nov 22, 2024
  • n5-blosc Public

    Blosc compression for N5

    saalfeldlab/n5-blosc’s past year of commit activity
    Java 0 BSD-2-Clause 5 1 3 Updated Nov 21, 2024
  • n5-universe Public

    Functionality shared across all n5

    saalfeldlab/n5-universe’s past year of commit activity
    Java 1 BSD-2-Clause 4 7 1 Updated Nov 21, 2024
  • n5-zarr Public

    Zarr filesystem backend for N5

    saalfeldlab/n5-zarr’s past year of commit activity
    Java 13 BSD-2-Clause 15 4 5 Updated Nov 21, 2024
  • n5 Public

    Not HDF5

    saalfeldlab/n5’s past year of commit activity
    Java 163 BSD-2-Clause 22 14 4 Updated Nov 19, 2024
  • n5-imglib2 Public
    saalfeldlab/n5-imglib2’s past year of commit activity
    Java 0 BSD-2-Clause 8 7 2 Updated Nov 19, 2024
  • diffusion-experiments Public
    saalfeldlab/diffusion-experiments’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 19, 2024
  • cellmap-utils-kit Public

    Collection of various utilities for cellmap data including data preparation scripts, functions to extract info from attributes etc

    saalfeldlab/cellmap-utils-kit’s past year of commit activity
    Python 0 MIT 0 2 4 Updated Nov 18, 2024
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