R-CMD-check-bioc

Added note output object compatibility #125

Sign in to view logs

Annotations

3 errors and 27 warnings

there is no package called 'xlsx'

invalid font type

conditions written in contrasts should be in the condition-indicating column! This is not the case, which can lead to errors downstream.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

'::' or ':::' import not declared from: 'scuttle'

Codoc mismatches from documentation object 'get_frac_exprs_sampleAgnostic':

Undocumented arguments in documentation object 'process_abundance_expression_info'

Files in the 'vignettes' directory but no files in 'inst/doc':

Directory 'inst/doc' does not exist.

'::' or ':::' import not declared from: 'scuttle'

Codoc mismatches from documentation object 'get_frac_exprs_sampleAgnostic':

Undocumented arguments in documentation object 'process_abundance_expression_info'

Files in the 'vignettes' directory but no files in 'inst/doc':

Directory 'inst/doc' does not exist.

unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:

This job succeeded