physio

Simple python toolbox to analyse physio signals (Respiration, ECG, and RSA)

Please jump to documentation now https://physio.readthedocs.io

Manuscript

This work has been published at eNeuro : https://www.eneuro.org/content/10/10/ENEURO.0197-23.2023

Features

• respiration cycle detection
• respiration cycle features (amplitude, duration, volumes ...)
• simple preprocess on signal : filter using scipy and smoothing
• ecg peak detection
• ecg/hrv metrics (time domain and freq domain)
• rsa : new approach to get cycle-per-cycle metrics
• cyclic deformation machinery : a simple strecher of any signal to cycle template
• simple reader of micromed and brainvision using neo
• "automagic" parameters for differents species

## Installation from PyPi

pip install physio

## Installation from source

git clone https://github.com/samuelgarcia/physio.git
cd physio
pip install -e .

Update:

cd physio
git pull origin main

Authors

Samuel Garcia with the help of Valentin Ghibaudo and Jules Granget

This toolbox is used in the CMO team from the CRNL.