Functional OpenMM simulation, test, viewer #9
Workflow file for this run
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| # Name of the GitHub Action | |
| name: Build plugin on Pull Request | |
| # Specify when the Action should be triggered: when a pull request is opened against the 'devel' or 'master' branch | |
| on: | |
| pull_request: | |
| branches: [devel, master] | |
| # Define the job that should be run | |
| jobs: | |
| build: | |
| # Specify the machine to run the job on | |
| runs-on: ubuntu-latest | |
| # Define the steps to be taken in the job | |
| steps: | |
| # Installing scipion and miniconda dependencies | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y wget gcc g++ libopenmpi-dev make | |
| # Installing Miniconda | |
| - name: Install Miniconda | |
| working-directory: ${{ github.workspace }}/../ | |
| run: | | |
| wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh | |
| bash Miniconda3-latest-Linux-x86_64.sh -b -p miniconda/ | |
| source miniconda/etc/profile.d/conda.sh | |
| conda update -n base -c defaults conda -y | |
| # Installing Scipion | |
| - name: Install Scipion | |
| working-directory: ${{ github.workspace }}/../ | |
| run: | | |
| eval "$(miniconda/bin/conda shell.bash hook)" | |
| pip3 install --user scipion-installer | |
| python3 -m scipioninstaller -conda -noXmipp -noAsk scipion | |
| # Installing scipion-chem | |
| # Checkout to Pull Request branch if exists, by default stays in devel | |
| - name: Install scipion-chem (in branch ${{ github.head_ref }} if exists) | |
| working-directory: ${{ github.workspace }}/../ | |
| env: | |
| REPO_NAME: scipion-chem | |
| BRANCH_NAME: ${{ github.head_ref }} | |
| run: | | |
| git clone https://github.com/scipion-chem/$REPO_NAME.git | |
| if [ $(git ls-remote --heads https://github.com/scipion-chem/$REPO_NAME.git $BRANCH_NAME | wc -l) -eq 1 ]; then | |
| cd $REPO_NAME && git checkout $BRANCH_NAME && cd - | |
| fi | |
| scipion/scipion3 installp -p $REPO_NAME --devel | |
| # Check out the repository in the pull request | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.head_ref }} | |
| # Install plugin from the pull request using the Scipion3 installp command | |
| - name: Install plugin from pull request | |
| working-directory: ${{ github.workspace }} | |
| run: ../scipion/scipion3 installp -p . --devel | |
| # Run all tests | |
| - name: Run tests | |
| working-directory: ${{ github.workspace }}/${{ vars.FOLDER_WITH_VERSION }} | |
| run: | | |
| eval "$(${{ github.workspace }}/../miniconda/bin/conda shell.bash hook)" | |
| conda activate scipion3 | |
| python runTests.py ${{ github.workspace }}/../scipion/scipion3 ${{ vars.FOLDER_WITH_VERSION }} -noGPU -testData=testData.json |