Change default matplotlib.rcParams["axes.grid"] from True to False #3347
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Description
When creating heatmaps, matrices, and various graphs using large datasets with seaborn,
scanpy.set_figure_params()
provides helpful default configurations for the plot. However, one default, caused bymatplotlib.rcParams["axes.grid"] = True
, provides no benefit to the vast majority of plots, making them unreadable and confusing (especially with very large plots). Below is a simple example; evidently, the distortion increases with graph complexity.Images
Graph with default grid:
Graph without default grid:
Conclusion
This change simply modifies
matplotlib.rcParams["axes.grid"]
fromTrue
toFalse
, not affecting any other components of the module. We believe this adjusted default would benefit the majority of graphs compared to the original. If one would like to use the grid lines for any reason (which we believe is a niche use case), they may runmatplotlib.pyplot.rcParams["axes.grid"] = True
.