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Surveyor filtering #241

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Surveyor filtering #241

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zorino
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@zorino zorino commented Mar 16, 2016

just to keep your branch up to date with Surveyor

zorino added 23 commits January 13, 2015 09:40
@zorino
Surveyor: add filter options to build similarity and distance matrices
0ca6c41 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
Surveyor: change type verification with defined variables
324c512 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
fix unused variable
6540f7d 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
Surveyor: storekeeper now use define values instead of int
7bd03fb 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
edit StoreKeeper.cpp physical from virtual colors loop now in N*LogN
28b0d47 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
edit comments in Mother
62131e3 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
edit typo in Mother.cpp comments
ef1d529 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
edit output the name of the actors for debugging purpose
bd004c5 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
edit refactored the Reades comments
1cacd6c 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
edit comments in Storekeeper.cpp
1d8bc84 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
add BUILD to .gitignore
74ca0ad 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
fix: segfault of message StoreKeeper->KmerMatrixOwner
9eb236f 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
add multiple matrices output for filters [DEBUG]
07eb149 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
surveyor: many filters in 1 run
059b042 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
fix undesirable and random print of kmerMatrix
7dd2cbc 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
add normalized similarity and distance matrices
1ed9d2d 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
edit rm old comments
a502b05 
Signed-off-by: Maxime Déraspe <[email protected]>
@zorino
add Surveyor scripts
5099a8e 
Signed-off-by: zorino <[email protected]>
@zorino
fix bug in upgma gentree
3bdd5f7 
Signed-off-by: zorino <[email protected]>
@zorino
add support to normalize matrix with another matrix norms
725041c 
Signed-off-by: zorino <[email protected]>
@zorino
add matrix-transform script
c276f35 
Signed-off-by: zorino <[email protected]>
@zorino
edit treeclust hierarchical clustering method
6702e82 
Signed-off-by: zorino <[email protected]>
@zorino
edit matrix-transform.py script
e8eda44 
Signed-off-by: zorino <[email protected]>
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