try to fix fitsio issue #357
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| name: Testing | |
| # Run this workflow every time a new commit pushed to your repository | |
| on: push | |
| jobs: | |
| tester: | |
| name: Test the code | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: System packages | |
| run: | | |
| sudo apt install libbz2 libbz2-dev | |
| # needed for fitsio... | |
| - name: Python setup | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: 'x64' | |
| cache: 'pip' | |
| - name: Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install pytest | |
| pip install pytest-cov | |
| pip install coveralls | |
| pip install scikit-learn torch | |
| pip install wheel | |
| pip install . | |
| pip install pytz numba healpy speclite fitsio photutils==1.6.0 | |
| pip install git+https://github.com/desihub/[email protected] | |
| pip install --no-build-isolation git+https://github.com/desihub/[email protected] | |
| # for desitarget | |
| - name: Fetching data | |
| run: | | |
| cd tests | |
| mkdir templ_data | |
| wget -q https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2411/small_phoenix.tar.gz | |
| tar xfz small_phoenix.tar.gz | |
| mkdir templ_data_desi | |
| cd templ_data_desi/ | |
| wget -q -r -np -nd https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2411/templ_data_desi/ | |
| cd .. | |
| mkdir templ_data_sdss | |
| cd templ_data_sdss/ | |
| wget -q -r -np -nd https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2411/templ_data_sdss/ | |
| cd ../data/ | |
| wget -q https://data.desi.lbl.gov/public/edr/spectro/redux/fuji/healpix/sv1/bright/103/10378/coadd-sv1-bright-10378.fits | |
| wget -q https://data.desi.lbl.gov/public/edr/spectro/redux/fuji/healpix/sv1/bright/103/10378/redrock-sv1-bright-10378.fits | |
| cd ../../ | |
| - name: EnvVar | |
| run: | | |
| echo "RVS_NN_DEVICE=cpu" >> "$GITHUB_ENV" | |
| - name: Testing | |
| run: | | |
| pytest --cov=rvspecfit | |
| - name: Coveralls | |
| if: ${{ success() }} | |
| run: coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |