Update README.md #361
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Testing | |
| # Run this workflow every time a new commit pushed to your repository | |
| on: push | |
| jobs: | |
| tester: | |
| name: Test the code | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: System packages | |
| run: | | |
| sudo apt install libbz2-dev | |
| # needed for fitsio... | |
| - name: Python setup | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: 'x64' | |
| cache: 'pip' | |
| - name: Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements.txt | |
| pip install pytest | |
| pip install pytest-cov | |
| pip install coveralls | |
| pip install scikit-learn torch | |
| pip install wheel | |
| pip install . | |
| pip install pytz numba healpy speclite fitsio photutils==1.6.0 | |
| pip install git+https://github.com/desihub/[email protected] | |
| pip install --no-build-isolation git+https://github.com/desihub/[email protected] | |
| # for desitarget | |
| - name: Fetching data | |
| run: | | |
| cd tests | |
| mkdir templ_data | |
| wget -q https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2411/small_phoenix.tar.gz | |
| tar xfz small_phoenix.tar.gz | |
| mkdir templ_data_desi | |
| cd templ_data_desi/ | |
| wget -q -r -np -nd https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2411/templ_data_desi/ | |
| cd .. | |
| mkdir templ_data_sdss | |
| cd templ_data_sdss/ | |
| wget -q -r -np -nd https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2411/templ_data_sdss/ | |
| cd ../data/ | |
| wget -q https://data.desi.lbl.gov/public/edr/spectro/redux/fuji/healpix/sv1/bright/103/10378/coadd-sv1-bright-10378.fits | |
| wget -q https://data.desi.lbl.gov/public/edr/spectro/redux/fuji/healpix/sv1/bright/103/10378/redrock-sv1-bright-10378.fits | |
| cd ../../ | |
| - name: EnvVar | |
| run: | | |
| echo "RVS_NN_DEVICE=cpu" >> "$GITHUB_ENV" | |
| - name: Testing | |
| run: | | |
| pytest --cov=rvspecfit | |
| - name: Coveralls | |
| if: ${{ success() }} | |
| run: coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |