update testing

.github/workflows/test.yml

@@ -32,11 +32,17 @@ jobs:
         run: |
           cd tests
           mkdir templ_data
-          cd templ_data
-          wget -q -r -nd -np https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2401/
-          mv small_phoenix.tar.gz ../
-          cd ..
+          wget -q https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2407/small_phoenix.tar.gz
           tar xfz small_phoenix.tar.gz
+          mkdir templ_data_desi
+          cd templ_data_desi/
+          wget -q -r -np -nd https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2407/templ_data_desi/
+          cd ..
+          mkdir templ_data_sdss
+          cd templ_data_sdss/
+          wget -q -r -np -nd https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2407/templ_data_sdss/
+          cd ../data/
+          wget https://data.desi.lbl.gov/public/edr/spectro/redux/fuji/healpix/sv1/bright/103/10378/coadd-sv1-bright-10378.fits
           cd ..
       - name: Testing
         run: |

tests/accuracy.py

@@ -1,4 +1,5 @@
 import os
+
 os.environ['OMP_NUM_THREADS'] = '1'
 import sys
 import astropy.io.fits as pyfits
@@ -13,14 +14,14 @@
 
 
 class si:
-    fname = 'tests/test.yaml'
+    fname = 'tests/yamls/test.yaml'
     config = utils.read_config(fname)
 
 
 def doone(seed,
           sn=100,
           nlam=400,
-          config_name='tests/test.yaml',
+          config_name='tests/yamls/test.yaml',
           doplot=False,
           resol=1000):
 

tests/test_fit.py

@@ -27,7 +27,7 @@ def test_config():
 
 
 def test_fit():
-    config = utils.read_config(path + '/config.yaml')
+    config = utils.read_config(path + '/yamls/config_sdss.yaml')
 
     # read data
     dat = pyfits.getdata(path + '/data/spec-0266-51602-0031.fits')

tests/test_fit_fake.py

@@ -1,4 +1,5 @@
 import os
+
 os.environ['OMP_NUM_THREADS'] = '1'
 import sys
 import astropy.io.fits as pyfits
@@ -14,7 +15,7 @@
 
 
 def test_fit_fake():
-    config = utils.read_config(path + '/test.yaml')
+    config = utils.read_config(path + '/yamls/test.yaml')
     # read data
     lam = np.linspace(4600, 5400, 800)
     v0 = np.random.normal(0, 100)

tests/test_fit_fake_grid.py

@@ -1,4 +1,5 @@
 import os
+
 os.environ['OMP_NUM_THREADS'] = '1'
 import sys
 import astropy.io.fits as pyfits
@@ -10,11 +11,12 @@
 import pathlib
 
 from mktemps import getspec
+
 path = str(pathlib.Path(__file__).parent.absolute())
 
 
 def test_fake_grid():
-    config = utils.read_config(path + '/test.yaml')
+    config = utils.read_config(path + '/yamls/test.yaml')
 
     # read data
     lam = np.linspace(4600, 5400, 800)

tests/test_interp.py

@@ -1,14 +1,16 @@
 import os
+
 os.environ['OMP_NUM_THREADS'] = '1'
 from rvspecfit import spec_fit
 from rvspecfit import spec_inter
 from rvspecfit import utils
 import pathlib
+
 path = str(pathlib.Path(__file__).parent.absolute())
 
 
 def test_interp():
-    conf = utils.read_config(path + '/config.yaml')
+    conf = utils.read_config(path + '/yamls/config_sdss.yaml')
     interp = spec_inter.getInterpolator('sdss1', conf)
     interp.eval({'teff': 5000, 'logg': 1, 'feh': -1, 'alpha': 0.3})
 

tests/test_sdss.py

@@ -18,7 +18,7 @@
 
 
 def test_fits():
-    config = utils.read_config(path + '/config.yaml')
+    config = utils.read_config(path + '/yamls/config_sdss.yaml')
 
     # read data
     dat = pyfits.getdata(path + '/data/spec-0266-51602-0031.fits')