Merge pull request #589 from sennetconsortium/maxsibilla/issue-574

Updating UBKG link used
sennetconsortium · Nov 20, 2024 · 997a210 · 997a210
2 parents 2dbf07c + 50edf55
commit 997a210
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Showing 2 changed files with 1 addition and 2 deletions.
diff --git a/src/instance/app.cfg.example b/src/instance/app.cfg.example
@@ -108,7 +108,6 @@ UBKG_ENDPOINT_VALUESET = 'valueset?parent_sab=SENNET&parent_code={code}&child_sa
 UBKG_CODES = '{"specimen_categories":"C020076", "organ_types":{"code": "C000008", "key": "organs", "endpoint": "organs?application_context=SENNET"}, "entities": "C000012", "source_types":"C050020"}'
 
 # UBKG Integration Configs for Rule Chain
-UBKG_INTEGRATION_ENDPOINT = 'http://gateway.dev.hubmapconsortium.org:8181/'
 APPLICATION_CONTEXT = 'SENNET'
 
 # URI from which to load the assay classifier rules.

diff --git a/src/lib/rule_chain.py b/src/lib/rule_chain.py
@@ -193,7 +193,7 @@ def apply_source_type_transformations(source_type: str, rule_value_set: dict) ->
 
 def get_data_from_ubkg(ubkg_code: str) -> dict:
     query = urllib.parse.urlencode({"application_context": current_app.config['APPLICATION_CONTEXT']})
-    ubkg_api_url = f"{current_app.config['UBKG_INTEGRATION_ENDPOINT']}assayclasses/{ubkg_code}?{query}"
+    ubkg_api_url = f"{current_app.config['UBKG_SERVER']}assayclasses/{ubkg_code}?{query}"
     req = urllib.request.Request(ubkg_api_url)
     try:
         with urllib.request.urlopen(req) as response: