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Add variant and sample filtering to query command #73

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tomwhite opened this issue Sep 2, 2024 · 1 comment

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tomwhite commented Sep 2, 2024

Currently you can only use -i/-e/-r/-s/-t with the view command. This would add these options to the query command.

This might be a good opportunity to factor out Click options like we do in bio2zarr: https://github.com/sgkit-dev/bio2zarr/blob/main/bio2zarr/cli.py#L26

Will-Tyler mentioned this issue

Query variant filtering #82

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Will-Tyler commented Sep 26, 2024

It might make more sense to wait to implement sample filtering after #83 is done.

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