Skip to content

Issues: sgkit-dev/vcztools

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

19 Open 28 Closed
19 Open 28 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Make robust to non-essential missing fields with clear interpretation
#107 opened Nov 21, 2024 by jeromekelleher
Check exit status codes match bcftools
#104 opened Nov 19, 2024 by jeromekelleher Initial release
Robustness checks
#101 opened Nov 19, 2024 by jeromekelleher Initial release
Documentation
#100 opened Nov 19, 2024 by jeromekelleher Initial release
Handel or ignore non-standard dimensions
#99 opened Nov 13, 2024 by timothymillar
3
Run tests against Zarr 3
#98 opened Nov 5, 2024 by tomwhite
vcztools view: write performance
#94 opened Oct 18, 2024 by Will-Tyler
7
vcztools query: implement %SAMPLE tag
#90 opened Oct 17, 2024 by Will-Tyler
vcztools query: optimize query evaluation
#84 opened Sep 27, 2024 by Will-Tyler
2
vcztools view: INFO field computation performance
#79 opened Sep 9, 2024 by Will-Tyler Initial release
3
Add variant and sample filtering to query command
#73 opened Sep 2, 2024 by tomwhite
1
Add support for reading regions and targets from a file (-R/-T)
#72 opened Sep 2, 2024 by tomwhite
Support genotypes in filtering expressions
#71 opened Sep 2, 2024 by Will-Tyler
Code coverage
#56 opened Aug 15, 2024 by tomwhite
1
Output command line provenance in the header
#46 opened Aug 6, 2024 by jeromekelleher
Add cd workflow and post initial package
#43 opened Aug 6, 2024 by jeromekelleher Initial release
1
Roundtrip testing with hypothesis-vcf
#31 opened Jul 22, 2024 by tomwhite Initial release
1
ftoa fails (and unsafe) for floats > INT32_MAX bug Something isn't working
#21 opened Jul 12, 2024 by jeromekelleher Initial release
3
assert_vcfs_close doesn't handle missingness subtlety
#14 opened Jul 5, 2024 by jeromekelleher
1
ProTip! Updated in the last three days: updated:>2024-11-20.