bugfix: A/B typo

shahcompbio · Nov 22, 2024 · 5a53d08 · 5a53d08
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: signals
 Title: Single Cell Genomes with Allele Specificity
-Version: 0.11.3
+Version: 0.11.4
 Author@R: c(person("Marc", "Williams", email = "[email protected]",
                   role = c("aut", "cre")),
             person("Tyler", "Funnell",

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
+# signals 0.11.4
+
+* fix typo assigning A->B
+
 # signals 0.11.3
 
 * catch negative state_AS issue for singleton bins

diff --git a/R/callHSCN.R b/R/callHSCN.R
@@ -945,7 +945,7 @@ callHaplotypeSpecificCN <- function(CNbins,
       #sometimes if there is a singleton bin with a different state even the above doesn't catch
       #all A + B >state, in this case change the state. This isn't ideal, very hacky
       dplyr::mutate(state = ifelse(A + B > state, NA, state),
-                    A = ifelse(is.na(state), NA, B),
+                    A = ifelse(is.na(state), NA, A),
                     B = ifelse(is.na(A), NA, B)) %>% 
       tidyr::fill( c("state", "A", "B"), .direction = "up")
     #add 0|0 states for  hom deletions