fix argument naming to get_dt_tables

sigven · May 27, 2024 · b9474dd · b9474dd
1 parent b649e71
commit b9474dd
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/pcgrr/inst/templates/pcgr_quarto_report/cna.qmd b/pcgrr/inst/templates/pcgr_quarto_report/cna.qmd
@@ -59,7 +59,7 @@ The same somatic mutation may frequently match with multiple evidence items from
 
 dt_content_tier1 <- 
   pcgrr:::get_dt_tables(
-    report = pcg_report, tier = 1, variant_class = "cna")
+    rep = pcg_report, tier = 1, variant_class = "cna")
 
 # if(expression_present_cna == FALSE){
 #   dt_content_tier1[['by_gene']]$TPM_GENE <- NULL
@@ -203,7 +203,7 @@ htmltools::br()
 
 dt_content_tier2 <- 
   pcgrr:::get_dt_tables(
-    report = pcg_report, tier = 2, variant_class = "cna")
+    rep = pcg_report, tier = 2, variant_class = "cna")
 
 # if(expression_present_cna == FALSE){
 #   dt_content_tier2[['by_gene']]$TPM_GENE <- NULL

diff --git a/pcgrr/inst/templates/pcgr_quarto_report/snv_indel/actionability.qmd b/pcgrr/inst/templates/pcgr_quarto_report/snv_indel/actionability.qmd
@@ -41,7 +41,7 @@ htmltools::br()
 
 dt_snv_content_tier1 <- 
   pcgrr:::get_dt_tables(
-    report = pcg_report, tier = 1, variant_class = "snv_indel")
+    rep = pcg_report, tier = 1, variant_class = "snv_indel")
 
 # if(expression_present_snv == FALSE){
 #   dt_snv_content_tier1[['by_gene']]$consTPM <- NULL
@@ -201,7 +201,7 @@ htmltools::br()
 
 dt_snv_content_tier2 <- 
   pcgrr:::get_dt_tables(
-    report = pcg_report, 
+    rep = pcg_report, 
     tier = 2, 
     variant_class = "snv_indel")