update chapter 11 #123
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: main | |
| name: Quarto Publish | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Install R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.2.3' # Update to most recent version of R | |
| - name: Install cURL Headers | |
| run: sudo apt-get install libcurl4-openssl-dev | |
| - name: Install system dependencies for R package textshaping | |
| run: sudo apt-get install -y libharfbuzz-dev libfribidi-dev libfreetype6-dev | |
| - name: Install system dependencies for R package gemtc | |
| run: sudo apt-get install -y libglpk-dev | |
| - name: Install system dependencies for JAGS | |
| run: sudo apt-get install -y r-cran-rjags | |
| - name: Install system dependencies for R package pdftools | |
| run: sudo apt-get install -y libpoppler-cpp-dev | |
| - name: Install TinyTeX | |
| run: | | |
| Rscript -e 'install.packages("tinytex")' | |
| Rscript -e 'tinytex::install_tinytex()' | |
| Rscript -e 'tinytex:::install_prebuilt()' | |
| - name: Install R packages from CRAN | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 2 | |
| packages: | | |
| any::rmarkdown | |
| any::bipd | |
| any::caret | |
| any::devtools | |
| any::dplyr | |
| any::fastDummies | |
| any::gbm | |
| any::gemtc | |
| any::ggmice | |
| any::ggplot2 | |
| any::ggpubr | |
| any::gridExtra | |
| any::jarbes | |
| any::jomo | |
| any::kableExtra | |
| any::knitr | |
| any::MatchThem | |
| any::Matrix | |
| any::metafor | |
| any::mice | |
| any::missForest | |
| any::mitml | |
| any::mixgb | |
| any::naniar | |
| any::netmeta | |
| any::precmed | |
| any::randomForestSRC | |
| any::ranger | |
| any::remotes | |
| any::robvis | |
| any::roxygen2 | |
| any::rpart | |
| any::rpart.plot | |
| any::sandwich | |
| any::sparseMVN | |
| any::survey | |
| any::tidyverse | |
| any::table1 | |
| any::tableone | |
| - name: Install remaining R packages | |
| run: | | |
| Rscript -e 'install.packages("MatchIt", dependencies=TRUE)' | |
| Rscript -e 'install.packages("WeightIt", dependencies=TRUE)' | |
| Rscript -e 'install.packages("optmatch", dependencies=TRUE)' | |
| Rscript -e 'install.packages("flextable", dependencies=TRUE)' | |
| Rscript -e 'install.packages("officer", dependencies=TRUE)' | |
| Rscript -e 'install.packages("testthat", dependencies=TRUE)' | |
| Rscript -e 'install.packages("interactionR", dependencies=TRUE)' | |
| - name: Render and Publish | |
| uses: quarto-dev/quarto-actions/publish@v2 | |
| with: | |
| target: gh-pages | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |