update chapter imputation #121
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| on: | |
| workflow_dispatch: | |
| push: | |
| branches: main | |
| name: Quarto Publish | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| - name: Install R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.2.3' # Update to most recent version of R | |
| - name: Install cURL Headers | |
| run: sudo apt-get install libcurl4-openssl-dev | |
| - name: Install system dependencies for R package textshaping | |
| run: sudo apt-get install -y libharfbuzz-dev libfribidi-dev libfreetype6-dev | |
| - name: Install system dependencies for R package gemtc | |
| run: sudo apt-get install -y libglpk-dev | |
| - name: Install system dependencies for JAGS | |
| run: sudo apt-get install -y r-cran-rjags | |
| - name: Install system dependencies for R package pdftools | |
| run: sudo apt-get install -y libpoppler-cpp-dev | |
| - name: Install TinyTeX | |
| run: | | |
| Rscript -e 'install.packages("tinytex")' | |
| Rscript -e 'tinytex::install_tinytex()' | |
| Rscript -e 'tinytex:::install_prebuilt()' | |
| - name: Install R packages from CRAN | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 2 | |
| packages: | | |
| any::rmarkdown | |
| any::bipd | |
| any::caret | |
| any::devtools | |
| any::dplyr | |
| any::fastDummies | |
| any::gbm | |
| any::gemtc | |
| any::ggmice | |
| any::ggplot2 | |
| any::ggpubr | |
| any::gridExtra | |
| any::jarbes | |
| any::jomo | |
| any::kableExtra | |
| any::knitr | |
| any::MatchThem | |
| any::Matrix | |
| any::metafor | |
| any::mice | |
| any::missForest | |
| any::mitml | |
| any::mixgb | |
| any::naniar | |
| any::netmeta | |
| any::precmed | |
| any::randomForestSRC | |
| any::ranger | |
| any::remotes | |
| any::robvis | |
| any::roxygen2 | |
| any::rpart | |
| any::rpart.plot | |
| any::sandwich | |
| any::sparseMVN | |
| any::survey | |
| any::tidyverse | |
| any::table1 | |
| any::tableone | |
| - name: Install remaining R packages | |
| run: | | |
| Rscript -e 'install.packages("MatchIt", dependencies=TRUE)' | |
| Rscript -e 'install.packages("WeightIt", dependencies=TRUE)' | |
| Rscript -e 'install.packages("optmatch", dependencies=TRUE)' | |
| Rscript -e 'install.packages("flextable", dependencies=TRUE)' | |
| Rscript -e 'install.packages("officer", dependencies=TRUE)' | |
| Rscript -e 'install.packages("testthat", dependencies=TRUE)' | |
| Rscript -e 'install.packages("interactionR", dependencies=TRUE)' | |
| - name: Render and Publish | |
| uses: quarto-dev/quarto-actions/publish@v2 | |
| with: | |
| target: gh-pages | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |