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Repository: ome/bio-formats-build Excluded PRs: - PR 632 dependabot[bot] 'Bump ZarrReader from `9a9e662` to `b17c3ab`' (status: failure) Already up to date. Merged PRs: - PR 656 dependabot[bot] 'Bump bio-formats-documentation from `b07c8df` to `b4da9c2`' - PR 657 dependabot[bot] 'Bump bioformats from `df36e69` to `783bb54`' Repository: ome/ZarrReader Excluded PRs: - PR 95 dgault 'Class cast exception when parsing metadata' (status: failure) - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment) Updating 9a9e662..b17c3ab Previously merged: - PR 93 dgault 'Bump version to 0.5.3-SNAPSHOT' - PR 92 dgault 'Bump version to 0.5.2' - PR 91 dgault 'Bump Bio-Formats version to 7.3.1' Merged PRs: - PR 97 melissalinkert 'Bump Bio-Formats version to 8.0.0' - PR 98 dominikl 'Fix class cast and labels issue.' Repository: ome/bio-formats-documentation Already up to date. Merged PRs: - PR 394 pwalczysko 'Add sas.upenn.edu to ignore list linkchecker' - PR 400 melissalinkert 'Add version history for 8.0.1' Repository: ome/bio-formats-examples Already up to date. Merged PRs: - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop' Repository: openmicroscopy/bioformats Excluded PRs: - PR 4254 melissalinkert 'Memoizer: ask any ImageReader instances to remove all but the current reader' (stage: draft) - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data' (label: exclude) - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure) - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru) - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats) - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude) - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking) Already up to date. Merged PRs: - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)' - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers' - PR 4243 melissalinkert 'Update IExtraMetadataWriter.setExtraMetadata(...) to accept an Object' - PR 4249 marcobitplane 'Imaris Reader: support for LZ4 compression and performance improvements' - PR 4252 melissalinkert 'Leica TCS: make sure XML file is on used files list' Repository: ome/ome-codecs Already up to date. Merged PRs: - PR 41 rharkes 'Add LZ4 compression/decompression' Repository: ome/ome-common-java Already up to date. Repository: ome/ome-jai Already up to date. Repository: ome/ome-mdbtools Already up to date. Repository: ome/ome-metakit Already up to date. Repository: ome/ome-model Already up to date. Merged PRs: - PR 174 jburel 'Remove docs' Repository: ome/ome-poi Already up to date. Repository: ome/ome-stubs Already up to date. Generated by BIOFORMATS-push#262 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/262/)
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[submodule "ome-common-java"] | ||
path = ome-common-java | ||
url = https://github.com/ome/ome-common-java.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-common-java.git | ||
branch = merge_ci | ||
[submodule "ome-model"] | ||
path = ome-model | ||
url = https://github.com/ome/ome-model.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-model.git | ||
branch = merge_ci | ||
[submodule "ome-poi"] | ||
path = ome-poi | ||
url = https://github.com/ome/ome-poi.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-poi.git | ||
branch = merge_ci | ||
[submodule "ome-mdbtools"] | ||
path = ome-mdbtools | ||
url = https://github.com/ome/ome-mdbtools.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-mdbtools.git | ||
branch = merge_ci | ||
[submodule "ome-jai"] | ||
path = ome-jai | ||
url = https://github.com/ome/ome-jai.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-jai.git | ||
branch = merge_ci | ||
[submodule "ome-codecs"] | ||
path = ome-codecs | ||
url = https://github.com/ome/ome-codecs.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-codecs.git | ||
branch = merge_ci | ||
[submodule "ome-metakit"] | ||
path = ome-metakit | ||
url = https://github.com/ome/ome-metakit.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-metakit.git | ||
branch = merge_ci | ||
[submodule "ome-stubs"] | ||
path = ome-stubs | ||
url = https://github.com/ome/ome-stubs.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-stubs.git | ||
branch = merge_ci | ||
[submodule "bioformats"] | ||
path = bioformats | ||
url = https://github.com/openmicroscopy/bioformats.git | ||
branch = develop | ||
url = https://github.com/snoopycrimecop/bioformats.git | ||
branch = merge_ci | ||
[submodule "bio-formats-documentation"] | ||
path = bio-formats-documentation | ||
url = https://github.com/ome/bio-formats-documentation.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/bio-formats-documentation.git | ||
branch = merge_ci | ||
[submodule "bio-formats-examples"] | ||
path = bio-formats-examples | ||
url = https://github.com/ome/bio-formats-examples.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/bio-formats-examples.git | ||
branch = merge_ci | ||
[submodule "ZarrReader"] | ||
path = ZarrReader | ||
url = https://github.com/ome/ZarrReader.git | ||
branch = main | ||
url = https://github.com/snoopycrimecop/ZarrReader.git | ||
branch = merge_ci |
Submodule ZarrReader
updated
5 files
+3 −3 | .github/workflows/maven.yml | |
+6 −1 | CHANGELOG.md | |
+1 −1 | README.md | |
+2 −2 | pom.xml | |
+16 −13 | src/loci/formats/in/ZarrReader.java |
Submodule bio-formats-documentation
updated
4 files
+15 −0 | sphinx/about/whats-new.rst | |
+5 −1 | sphinx/conf.py | |
+1 −1 | sphinx/users/iqm/index.rst | |
+9 −9 | src/main/resources/format-pages.txt |
Submodule bioformats
updated
11 files
Submodule ome-codecs
updated
2 files
+116 −0 | src/main/java/ome/codecs/LZ4Codec.java | |
+81 −0 | src/test/java/ome/codecs/LZ4CodecTest.java |
Submodule ome-model
updated
83 files