Julia Dependency Update (#260) #697
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| name: CI with dynamic parallel matrix | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| ALLOWERRORS: 'false' | |
| NBCACHE: '.cache' | |
| JULIA_CONDAPKG_BACKEND: 'Null' | |
| JULIA_NUM_THREADS: 'auto' | |
| JULIA_CI: 'true' | |
| UV_SYSTEM_PYTHON: 1 | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| hash: ${{ steps.hash.outputs.value }} | |
| ver: ${{ steps.hash.outputs.ver }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| id: setup-python | |
| with: | |
| python-version: '3.x' | |
| - name: Read Julia version | |
| uses: SebRollen/[email protected] | |
| id: read_toml | |
| with: | |
| file: 'Manifest.toml' | |
| field: 'julia_version' | |
| - name: Setup Julia | |
| uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ steps.read_toml.outputs.value }} | |
| - name: Get environment hash | |
| id: hash | |
| run: | | |
| echo "value=${{ hashFiles('Project.toml', 'Manifest.toml', 'src/**') }}" >> "$GITHUB_OUTPUT" | |
| echo "ver=${{ runner.os }}-julia-${{ steps.read_toml.outputs.value }}" >> "$GITHUB_OUTPUT" | |
| - name: Cache Julia packages | |
| if: ${{ contains(runner.name, 'GitHub Actions') }} | |
| uses: actions/cache@v4 | |
| id: cache-julia | |
| with: | |
| path: ~/.julia | |
| key: ${{ steps.hash.outputs.ver }}-${{ steps.hash.outputs.value }} | |
| restore-keys: | | |
| ${{ steps.hash.outputs.ver }}- | |
| - name: Install Julia packages | |
| if: ${{ runner.environment == 'self-hosted' || steps.cache-julia.outputs.cache-hit != 'true' }} | |
| shell: julia --color=yes {0} | |
| run: | | |
| using Pkg | |
| Pkg.add(["IJulia", "Literate", "JSON"]) | |
| Pkg.activate(".") | |
| Pkg.instantiate() | |
| Pkg.precompile() | |
| - name: List notebooks as a JSON array | |
| id: set-matrix | |
| run: echo "matrix=$(python -c 'import glob, json; print(json.dumps(glob.glob("**/*.ipynb", root_dir="docs", recursive=True) + glob.glob("**/*.jl", root_dir="docs",recursive=True)))')" >> "$GITHUB_OUTPUT" | |
| execute: | |
| needs: setup | |
| strategy: | |
| max-parallel: 20 | |
| fail-fast: false | |
| matrix: | |
| notebook: ${{ fromJSON(needs.setup.outputs.matrix) }} | |
| runs-on: ubuntu-latest | |
| env: | |
| NB: docs/${{ matrix.notebook }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Cache notebook | |
| uses: actions/cache@v4 | |
| id: nb-cache | |
| with: | |
| path: ${{ env.NBCACHE }} | |
| key: ${{ needs.setup.outputs.ver }}-${{ needs.setup.outputs.hash }}-${{ hashFiles(env.NB) }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| with: | |
| python-version: '3.x' | |
| - name: Install uv | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| run: curl -LsSf https://astral.sh/uv/install.sh | sh | |
| - name: Install Python dependencies | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| run: uv pip install -r requirements.txt | |
| - name: Read Julia version | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| uses: SebRollen/[email protected] | |
| id: read_toml | |
| with: | |
| file: 'Manifest.toml' | |
| field: 'julia_version' | |
| - name: Setup Julia | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ steps.read_toml.outputs.value }} | |
| - name: Restore Julia packages | |
| if: ${{ runner.environment == 'github-hosted' && steps.nb-cache.outputs.cache-hit != 'true'}} | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.julia | |
| key: ${{ needs.setup.outputs.ver }}-${{ needs.setup.outputs.hash }} | |
| - name: Execute notebook | |
| if: ${{ steps.nb-cache.outputs.cache-hit != 'true' }} | |
| run: julia --project=@. execute.jl | |
| - name: Upload Notebook | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: notebook-${{ needs.setup.outputs.ver }}-${{ needs.setup.outputs.hash }}-${{ hashFiles(env.NB) }} | |
| path: ${{ env.NBCACHE }} | |
| include-hidden-files: true | |
| retention-days: 1 | |
| render: | |
| needs: execute | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Download notebooks | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: ${{ env.NBCACHE }}/ | |
| pattern: notebook-* | |
| merge-multiple: true | |
| - name: Copy back built notebooks | |
| run: cp --verbose -rf ${{ env.NBCACHE }}/docs/* docs/ | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install uv | |
| run: curl -LsSf https://astral.sh/uv/install.sh | sh | |
| - name: Install Python dependencies | |
| run: uv pip install -r requirements-jb.txt | |
| - name: Build website | |
| run: jupyter-book build docs/ | |
| - name: Upload pages artifact | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: docs/_build/html/ | |
| # CI conclusion for GitHub status check | |
| # Adaped from https://brunoscheufler.com/blog/2022-04-09-the-required-github-status-check-that-wasnt | |
| CI: | |
| needs: render | |
| if: always() | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: | | |
| if [[ ${{ needs.render.result }} == "success" ]]; then | |
| echo "Tests passed" | |
| exit 0 | |
| else | |
| echo "Tests failed" | |
| exit 1 | |
| fi | |
| # Deployment job | |
| deploy: | |
| name: Deploy to GitHub pages | |
| needs: render | |
| if: ${{ github.ref == 'refs/heads/main' }} | |
| # Grant GITHUB_TOKEN the permissions required to make a Pages deployment | |
| permissions: | |
| pages: write # to deploy to Pages | |
| id-token: write # to verify the deployment originates from an appropriate source | |
| actions: read # to download an artifact uploaded by `actions/upload-pages-artifact@v3` | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 |