run natively

.github/workflows/ci.yml

@@ -16,24 +16,29 @@ env:
   EXTRA_ARGS: ''   # Extra arguments for nbconvert
   PYTHON_VER: '3.11'
   JULIA_CPU_TARGET: 'generic;haswell,clone_all'
-  JULIA_NUM_THREADS: auto
+  JULIA_NUM_THREADS: 'auto'
   JULIA_CONDAPKG_BACKEND: 'Null'
   JULIA_CI: 'true'
 
 jobs:
   setup:
     runs-on: ubuntu-latest
-    container:
-      image: julia:1.9.3
     outputs:
       matrix: ${{ steps.set-matrix.outputs.matrix }}
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
-      - name: Setup Python
-        uses: actions/setup-python@v4
+      - name: Read Julia version
+        uses: SebRollen/[email protected]
+        id: read_toml
         with:
-          python-version: ${{ env.PYTHON_VER }}
+          file: 'Manifest.toml'
+          field: 'julia_version'
+      - name: Install Julia using jill.sh
+        run: |
+          wget -O /tmp/jill.sh https://raw.githubusercontent.com/abelsiqueira/jill/main/jill.sh
+          bash /tmp/jill.sh --version ${{ steps.read_toml.outputs.value }} -y
+          echo "$HOME/.local/bin" >> $GITHUB_PATH
       - name: Cache Julia deps
         uses: actions/cache@v3
         with:
@@ -43,9 +48,13 @@ jobs:
             ~/.julia/packages
             ~/.julia/environments
             ~/.local/share/jupyter/
-          key: ${{ runner.os }}-juliacontainer-${{ hashFiles('src/**','Project.toml', 'Manifest.toml')}}
+          key: ${{ runner.os }}-jill-${{ hashFiles('src/**','Project.toml', 'Manifest.toml')}}
           restore-keys: |
-            ${{ runner.os }}-juliacontainer-
+            ${{ runner.os }}-jill-
+      - name: Setup Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ env.PYTHON_VER }}
       - name: Install Julia deps
         env:
           PYTHON: ${{ env.pythonLocation }}/python
@@ -73,8 +82,6 @@ jobs:
         # Notebooks need to be executed
         notebook: ${{ fromJSON(needs.setup.outputs.matrix) }}
     runs-on: ubuntu-latest
-    container:
-      image: julia:1.9.3
     steps:
       - name: Checkout repository
         uses: actions/checkout@v4
@@ -85,11 +92,26 @@ jobs:
           path: docs/${{ matrix.notebook }}
           key: ${{ runner.os }}-notebook-${{ hashFiles(format('docs/{0}', matrix.notebook), 'src/**', 'Project.toml', 'Manifest.toml') }}
       - name: Setup Python
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
         uses: actions/setup-python@v4
         with:
           python-version: ${{ env.PYTHON_VER }}
       - name: Install Python deps
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
         run: python -m pip install --no-cache-dir nbconvert -r requirements.txt
+      - name: Read Julia version
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
+        uses: SebRollen/[email protected]
+        id: read_toml
+        with:
+          file: 'Manifest.toml'
+          field: 'julia_version'
+      - name: Install Julia using jill.sh
+        if: ${{ steps.cache.outputs.cache-hit != 'true' }}
+        run: |
+          wget -O /tmp/jill.sh https://raw.githubusercontent.com/abelsiqueira/jill/main/jill.sh
+          bash /tmp/jill.sh --version ${{ steps.read_toml.outputs.value }} -y
+          echo "$HOME/.local/bin" >> $GITHUB_PATH
       - name: Cache Julia deps
         if: ${{ steps.cache.outputs.cache-hit != 'true' }}
         uses: actions/cache@v3
@@ -100,9 +122,7 @@ jobs:
             ~/.julia/packages
             ~/.julia/environments
             ~/.local/share/jupyter/
-          key: ${{ runner.os }}-juliacontainer-${{ hashFiles('src/**','Project.toml', 'Manifest.toml', 'requirements.txt')}}
-          restore-keys: |
-            ${{ runner.os }}-juliacontainer-
+          key: ${{ runner.os }}-juliacontainer-${{ hashFiles('src/**','Project.toml', 'Manifest.toml')}}
       - name: Execute Notebook
         if: ${{ steps.cache.outputs.cache-hit != 'true' }}
         run: >

.github/workflows/update-manifest.yml

@@ -16,7 +16,6 @@ concurrency:
 
 env:
   APP_ID: '189113' # https://github.com/apps/wen-wei-s-pr-bot
-  JULIA_PKG_PRECOMPILE_AUTO: '0'
 
 jobs:
   update-manifest:
@@ -30,6 +29,8 @@ jobs:
       - name: Setup Julia
         uses: julia-actions/setup-julia@v1
       - name: Update Julia dependencies
+        env:
+          JULIA_PKG_PRECOMPILE_AUTO: '0'
         run: julia --color=yes --project=@. -e 'import Pkg; Pkg.update()'
       # Authenticate with a custom GitHub APP
       # https://github.com/peter-evans/create-pull-request/blob/main/docs/concepts-guidelines.md#authenticating-with-github-app-generated-tokens