WIP: check pairwise
vs sourmash compare
output
#366
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This PR evaluates and compares the results of
sourmash compare
to the output ofpairwise
.Specifically, it:
test_check_pairwise
, containing a snakemake workflow;sourmash compare
andpairwise
from this plugin to calculate comparisons between the 64 podar-ref sketches.At least at the moment, the comparison is done only for the
average_containment_ani
column.It is analogous to the gather check from https://github.com/ctb/2024-debug-gather-difference that we will add to this repo too, ref #363.
See sourmash-bio/sourmash#3134 for motivating inquiry ;)
TODO: