Halimeda

Repository of the paper:

A Deep Learning Approach to Estimate Halimeda incrassata Invasive Stage in the Mediterranean Sea

Caterina Muntaner-Gonzalez, Miguel Martin-Abadal, Yolanda Gonzalez-Cid

Link to our paper

Halimeda incrassata coverage estimation

This repository aims to provide the necessary tools and knowledge to operate our halimeda incrassata coverage estimation algorithm.

Installation

To clone the repository do:

$ git clone --recursive https://github.com/srv/Halimeda.git

$ git submodule update --init --recursive

$ git submodule foreach -q --recursive 'branch="$(git config -f $toplevel/.gitmodules submodule.$name.branch)"; git checkout $branch'

Object detection enviroment installation

$ cd object_detection

$ conda create -n <environment-name> --file object_req.txt

Download object detection model:

Object detection model

Semantic segmentation installation

$ cd semantic_segmentation/SS_Halimeda

$ conda env create --file segmentation.yaml

Weighted merge ROS implementation:

$ cd halimeda_detection

$ conda env create --file halimeda_merge.yml