cluster.txt

# SIMULACIONES CLUSTER - COMANDOS PRINCIPALES

cd paperWKDLSSLS

# Generate data for iterations by om
# (oms = number of rows in list_oms.csv)
# (base case: rows 1:6 + sensOM: rows 7:54 + sensCVID: rows 55:72)
qsub -t 1:72 iters.qsub

qsub -t 1:24 itersf0.qsub
qsub -t 1:72 iterssigR0.qsub

# Comparison of OM: in terms of IAV and depletion level
qsub OManalysis.qsub

# Run the simulations scenario by scenario
# (scenarios = number of rows in list_scenarios.csv)
qsub -t 1:1158 sims.qsub    # Base case runs (BSAFE: rows 1087:1158)
qsub -t 1159:1350 sims.qsub # Sensitivity to the OM (LHSC, SIGR)
qsub -t 1351:1458 sims.qsub # Sensitivity to the sampling quality (CVID)
                            

# Summarise the statistics by scenario
qsub stats.qsub


# Consultar estado mis tareas
qstat -u ssanchez

# Borrar tarea
qdel NUMEROTASK

# Alterar tarea
# - Bajar la prioridad
qalter -p -10 NUMEROTASK
# - Limitar el numero de nodos usados a 100
qalter -tc 100 NUMEROTASK