docs: updated software list

stanford-rc · Nov 18, 2024 · 76a53f0 · 76a53f0
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diff --git a/includes/data/software.yml b/includes/data/software.yml
@@ -5283,13 +5283,18 @@ software_modules:
       versions:
       - {description: 'A visualization framework for CRISPR/Cas9 knockout screens,
           analyzed with MAGeCK.', markedDefault: false, versionName: 0.4.17_py36}
-    - categories: biology, computational biology
-      defaultVersionName: .1.0.0_py39
-      description: Biopython is a set of freely available tools for biological computation
-        written in Python.
+    - categories: biology, genomics
+      defaultVersionName: 1.0.0_py39
+      description: SCENIC+ is a python package to build enhancer driven gene regulatory
+        networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq)
+        and single-cell chromatin accessibility (scATAC-seq) data.
       package: py-scenicplus
-      url: http://biopython.org
-      versions: []
+      url: https://github.com/aertslab/scenicplus
+      versions:
+      - {description: SCENIC+ is a python package to build enhancer driven gene regulatory
+          networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq)
+          and single-cell chromatin accessibility (scATAC-seq) data., markedDefault: false,
+        versionName: 1.0.0_py39}
     - categories: biology, genomics
       defaultVersionName: 2.0.1_py39
       description: HTSeq is a Python library to facilitate processing and analysis

diff --git a/src/docs/software/updates.xml b/src/docs/software/updates.xml
@@ -5,6 +5,15 @@
 <description>Sherlock software update feed</description>
 <link>https://www.sherlock.stanford.edu/docs/software/list</link>
 <atom:link href="https://www.sherlock.stanford.edu/docs/software/updates.xml" rel="self" type="application/rss+xml"/>
+    <item>
+        <title>New module: biology/py-scenicplus version 1.0.0_py39</title>
+        <description>SCENIC+ is a python package to build enhancer driven gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.</description>
+        <link>https://github.com/aertslab/scenicplus</link>
+        <guid>https://www.sherlock.stanford.edu/docs/software/list/?add:v=1.0.0_py39#py-scenicplus</guid>
+        <category>biology, genomics</category>
+        <author>[email protected] (Kilian Cavalotti)</author>
+        <pubDate>Mon, 18 Nov 2024 15:54:44 -0800</pubDate>
+    </item>
     <item>
         <title>New module: math/py-torch-scatter version 2.1.2_py312</title>
         <description>PyTorch Extension Library of Optimized Scatter Operations.</description>